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Items: 1 to 20 of 644

1.

Genome-wide mapping of copy number variation in humans: comparative analysis of high resolution array platforms.

Haraksingh RR, Abyzov A, Gerstein M, Urban AE, Snyder M.

PLoS One. 2011;6(11):e27859. doi: 10.1371/journal.pone.0027859. Epub 2011 Nov 30.

2.

Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans.

Haraksingh RR, Abyzov A, Urban AE.

BMC Genomics. 2017 Apr 24;18(1):321. doi: 10.1186/s12864-017-3658-x.

3.

Accuracy of CNV Detection from GWAS Data.

Zhang D, Qian Y, Akula N, Alliey-Rodriguez N, Tang J; Bipolar Genome Study, Gershon ES, Liu C.

PLoS One. 2011 Jan 13;6(1):e14511. doi: 10.1371/journal.pone.0014511.

4.

Comparison of genome-wide array genomic hybridization platforms for the detection of copy number variants in idiopathic mental retardation.

Tucker T, Montpetit A, Chai D, Chan S, Chénier S, Coe BP, Delaney A, Eydoux P, Lam WL, Langlois S, Lemyre E, Marra M, Qian H, Rouleau GA, Vincent D, Michaud JL, Friedman JM.

BMC Med Genomics. 2011 Mar 25;4:25. doi: 10.1186/1755-8794-4-25.

5.

Evaluation of copy number variation detection for a SNP array platform.

Zhang X, Du R, Li S, Zhang F, Jin L, Wang H.

BMC Bioinformatics. 2014 Feb 21;15:50. doi: 10.1186/1471-2105-15-50.

6.

Optimizing copy number variation analysis using genome-wide short sequence oligonucleotide arrays.

Oldridge DA, Banerjee S, Setlur SR, Sboner A, Demichelis F.

Nucleic Acids Res. 2010 Jun;38(10):3275-86. doi: 10.1093/nar/gkq073. Epub 2010 Feb 15.

7.

SNP arrays: comparing diagnostic yields for four platforms in children with developmental delay.

D'Amours G, Langlois M, Mathonnet G, Fetni R, Nizard S, Srour M, Tihy F, Phillips MS, Michaud JL, Lemyre E.

BMC Med Genomics. 2014 Dec 24;7:70. doi: 10.1186/s12920-014-0070-0.

8.

Application of Nexus copy number software for CNV detection and analysis.

Darvishi K.

Curr Protoc Hum Genet. 2010 Apr;Chapter 4:Unit 4.14.1-28. doi: 10.1002/0471142905.hg0414s65.

PMID:
20373515
9.

Diagnosis of copy number variation by Illumina next generation sequencing is comparable in performance to oligonucleotide array comparative genomic hybridisation.

Hayes JL, Tzika A, Thygesen H, Berri S, Wood HM, Hewitt S, Pendlebury M, Coates A, Willoughby L, Watson CM, Rabbitts P, Roberts P, Taylor GR.

Genomics. 2013 Sep;102(3):174-81. doi: 10.1016/j.ygeno.2013.04.006. Epub 2013 Apr 15.

10.

Impact of copy number variations burden on coding genome in humans using integrated high resolution arrays.

Veerappa AM, Lingaiah K, Vishweswaraiah S, Murthy MN, Suresh RV, Manjegowda DS, Ramachandra NB.

Genet Res (Camb). 2014 Dec 16;96:e17. doi: 10.1017/S0016672314000202.

PMID:
25578402
11.

Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays.

Komura D, Shen F, Ishikawa S, Fitch KR, Chen W, Zhang J, Liu G, Ihara S, Nakamura H, Hurles ME, Lee C, Scherer SW, Jones KW, Shapero MH, Huang J, Aburatani H.

Genome Res. 2006 Dec;16(12):1575-84. Epub 2006 Nov 22.

12.

Improved detection of global copy number variation using high density, non-polymorphic oligonucleotide probes.

Shen F, Huang J, Fitch KR, Truong VB, Kirby A, Chen W, Zhang J, Liu G, McCarroll SA, Jones KW, Shapero MH.

BMC Genet. 2008 Mar 28;9:27. doi: 10.1186/1471-2156-9-27.

13.

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array.

Hou Y, Bickhart DM, Hvinden ML, Li C, Song J, Boichard DA, Fritz S, Eggen A, DeNise S, Wiggans GR, Sonstegard TS, Van Tassell CP, Liu GE.

BMC Genomics. 2012 Aug 6;13:376. doi: 10.1186/1471-2164-13-376.

14.

Global patterns of large copy number variations in the human genome reveal complexity in chromosome organization.

Veerappa AM, Suresh RV, Vishweswaraiah S, Lingaiah K, Murthy M, Manjegowda DS, Padakannaya P, Ramachandra NB.

Genet Res (Camb). 2015 Sep 22;97:e18. doi: 10.1017/S0016672315000191.

PMID:
26390810
15.

Identification and validation of copy number variants using SNP genotyping arrays from a large clinical cohort.

Valsesia A, Stevenson BJ, Waterworth D, Mooser V, Vollenweider P, Waeber G, Jongeneel CV, Beckmann JS, Kutalik Z, Bergmann S.

BMC Genomics. 2012 Jun 15;13:241. doi: 10.1186/1471-2164-13-241.

16.

Exploiting sequence similarity to validate the sensitivity of SNP arrays in detecting fine-scaled copy number variations.

Wong G, Leckie C, Gorringe KL, Haviv I, Campbell IG, Kowalczyk A.

Bioinformatics. 2010 Apr 15;26(8):1007-14. doi: 10.1093/bioinformatics/btq088. Epub 2010 Feb 25.

PMID:
20189937
17.

Towards a comprehensive structural variation map of an individual human genome.

Pang AW, MacDonald JR, Pinto D, Wei J, Rafiq MA, Conrad DF, Park H, Hurles ME, Lee C, Venter JC, Kirkness EF, Levy S, Feuk L, Scherer SW.

Genome Biol. 2010;11(5):R52. doi: 10.1186/gb-2010-11-5-r52. Epub 2010 May 19.

18.

Copy number variants in the sheep genome detected using multiple approaches.

Jenkins GM, Goddard ME, Black MA, Brauning R, Auvray B, Dodds KG, Kijas JW, Cockett N, McEwan JC.

BMC Genomics. 2016 Jun 8;17:441. doi: 10.1186/s12864-016-2754-7.

19.

Detection of copy number variation using SNP genotyping.

Cooper GM, Mefford HC.

Methods Mol Biol. 2011;767:243-52. doi: 10.1007/978-1-61779-201-4_18.

PMID:
21822880
20.

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.

Hong H, Su Z, Ge W, Shi L, Perkins R, Fang H, Xu J, Chen JJ, Han T, Kaput J, Fuscoe JC, Tong W.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S17. doi: 10.1186/1471-2105-9-S9-S17.

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