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Items: 1 to 20 of 236

1.

GeneDB--an annotation database for pathogens.

Logan-Klumpler FJ, De Silva N, Boehme U, Rogers MB, Velarde G, McQuillan JA, Carver T, Aslett M, Olsen C, Subramanian S, Phan I, Farris C, Mitra S, Ramasamy G, Wang H, Tivey A, Jackson A, Houston R, Parkhill J, Holden M, Harb OS, Brunk BP, Myler PJ, Roos D, Carrington M, Smith DF, Hertz-Fowler C, Berriman M.

Nucleic Acids Res. 2012 Jan;40(Database issue):D98-108. doi: 10.1093/nar/gkr1032.

2.

GeneDB: a resource for prokaryotic and eukaryotic organisms.

Hertz-Fowler C, Peacock CS, Wood V, Aslett M, Kerhornou A, Mooney P, Tivey A, Berriman M, Hall N, Rutherford K, Parkhill J, Ivens AC, Rajandream MA, Barrell B.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D339-43.

3.

LeishCyc: a biochemical pathways database for Leishmania major.

Doyle MA, MacRae JI, De Souza DP, Saunders EC, McConville MJ, Likić VA.

BMC Syst Biol. 2009 Jun 5;3:57. doi: 10.1186/1752-0509-3-57.

4.

MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data.

Vallenet D, Belda E, Calteau A, Cruveiller S, Engelen S, Lajus A, Le Fèvre F, Longin C, Mornico D, Roche D, Rouy Z, Salvignol G, Scarpelli C, Thil Smith AA, Weiman M, Médigue C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D636-47. doi: 10.1093/nar/gks1194.

5.

PomBase 2015: updates to the fission yeast database.

McDowall MD, Harris MA, Lock A, Rutherford K, Staines DM, Bähler J, Kersey PJ, Oliver SG, Wood V.

Nucleic Acids Res. 2015 Jan;43(Database issue):D656-61. doi: 10.1093/nar/gku1040.

6.

Parasite genome databases and web-based resources.

Hertz-Fowler C, Hall N.

Methods Mol Biol. 2004;270:45-74.

PMID:
15153622
7.

The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes.

Hamilton JP, Neeno-Eckwall EC, Adhikari BN, Perna NT, Tisserat N, Leach JE, Lévesque CA, Buell CR.

Database (Oxford). 2011 Nov 26;2011:bar053. doi: 10.1093/database/bar053.

8.

dictyBase: a new Dictyostelium discoideum genome database.

Kreppel L, Fey P, Gaudet P, Just E, Kibbe WA, Chisholm RL, Kimmel AR.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D332-3.

9.

Ensembl Genomes 2013: scaling up access to genome-wide data.

Kersey PJ, Allen JE, Christensen M, Davis P, Falin LJ, Grabmueller C, Hughes DS, Humphrey J, Kerhornou A, Khobova J, Langridge N, McDowall MD, Maheswari U, Maslen G, Nuhn M, Ong CK, Paulini M, Pedro H, Toneva I, Tuli MA, Walts B, Williams G, Wilson D, Youens-Clark K, Monaco MK, Stein J, Wei X, Ware D, Bolser DM, Howe KL, Kulesha E, Lawson D, Staines DM.

Nucleic Acids Res. 2014 Jan;42(Database issue):D546-52. doi: 10.1093/nar/gkt979.

10.

The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide.

Liolios K, Tavernarakis N, Hugenholtz P, Kyrpides NC.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D332-4.

11.

CIPRO 2.5: Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality.

Endo T, Ueno K, Yonezawa K, Mineta K, Hotta K, Satou Y, Yamada L, Ogasawara M, Takahashi H, Nakajima A, Nakachi M, Nomura M, Yaguchi J, Sasakura Y, Yamasaki C, Sera M, Yoshizawa AC, Imanishi T, Taniguchi H, Inaba K.

Nucleic Acids Res. 2011 Jan;39(Database issue):D807-14. doi: 10.1093/nar/gkq1144.

12.

The comprehensive microbial resource.

Davidsen T, Beck E, Ganapathy A, Montgomery R, Zafar N, Yang Q, Madupu R, Goetz P, Galinsky K, White O, Sutton G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D340-5. doi: 10.1093/nar/gkp912.

13.

FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum.

Güldener U, Mannhaupt G, Münsterkötter M, Haase D, Oesterheld M, Stümpflen V, Mewes HW, Adam G.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D456-8.

14.

VEGA, the genome browser with a difference.

Loveland J.

Brief Bioinform. 2005 Jun;6(2):189-93. Review.

PMID:
15975227
15.

Virus Variation Resource--recent updates and future directions.

Brister JR, Bao Y, Zhdanov SA, Ostapchuck Y, Chetvernin V, Kiryutin B, Zaslavsky L, Kimelman M, Tatusova TA.

Nucleic Acids Res. 2014 Jan;42(Database issue):D660-5. doi: 10.1093/nar/gkt1268.

16.

VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics.

Yang J, Chen L, Sun L, Yu J, Jin Q.

Nucleic Acids Res. 2008 Jan;36(Database issue):D539-42.

17.

Megx.net: integrated database resource for marine ecological genomics.

Kottmann R, Kostadinov I, Duhaime MB, Buttigieg PL, Yilmaz P, Hankeln W, Waldmann J, Glöckner FO.

Nucleic Acids Res. 2010 Jan;38(Database issue):D391-5. doi: 10.1093/nar/gkp918.

18.

The Génolevures database.

Martin T, Sherman DJ, Durrens P.

C R Biol. 2011 Aug-Sep;334(8-9):585-9. doi: 10.1016/j.crvi.2011.05.004. Review.

PMID:
21819938
19.

The Vertebrate Genome Annotation browser 10 years on.

Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM, Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S, Wilming LG.

Nucleic Acids Res. 2014 Jan;42(Database issue):D771-9. doi: 10.1093/nar/gkt1241.

20.

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

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