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Items: 1 to 20 of 79

1.

Incorporating evolutionary information and functional domains for identifying RNA splicing factors in humans.

Hsu JB, Bretaña NA, Lee TY, Huang HD.

PLoS One. 2011;6(11):e27567. doi: 10.1371/journal.pone.0027567. Epub 2011 Nov 16.

2.

Incorporating significant amino acid pairs and protein domains to predict RNA splicing-related proteins with functional roles.

Hsu JB, Huang KY, Weng TY, Huang CH, Lee TY.

J Comput Aided Mol Des. 2014 Jan;28(1):49-60. doi: 10.1007/s10822-014-9706-6. Epub 2014 Jan 19.

PMID:
24442949
3.

Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing.

Su EC, Chang JM, Cheng CW, Sung TY, Hsu WL.

BMC Bioinformatics. 2012;13 Suppl 17:S13. doi: 10.1186/1471-2105-13-S17-S13. Epub 2012 Dec 13.

4.

Predicting protein-binding RNA nucleotides using the feature-based removal of data redundancy and the interaction propensity of nucleotide triplets.

Choi S, Han K.

Comput Biol Med. 2013 Nov;43(11):1687-97. doi: 10.1016/j.compbiomed.2013.08.011. Epub 2013 Aug 21.

PMID:
24209914
5.

SVM based prediction of RNA-binding proteins using binding residues and evolutionary information.

Kumar M, Gromiha MM, Raghava GP.

J Mol Recognit. 2011 Mar-Apr;24(2):303-13. doi: 10.1002/jmr.1061.

PMID:
20677174
6.

Predicting RNA-binding sites of proteins using support vector machines and evolutionary information.

Cheng CW, Su EC, Hwang JK, Sung TY, Hsu WL.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S6. doi: 10.1186/1471-2105-9-S12-S6.

7.

Prediction of RNA-binding amino acids from protein and RNA sequences.

Choi S, Han K.

BMC Bioinformatics. 2011;12 Suppl 13:S7. doi: 10.1186/1471-2105-12-S13-S7. Epub 2011 Nov 30.

8.

Incorporating distant sequence features and radial basis function networks to identify ubiquitin conjugation sites.

Lee TY, Chen SA, Hung HY, Ou YY.

PLoS One. 2011 Mar 9;6(3):e17331. doi: 10.1371/journal.pone.0017331.

9.

Predicting RNA-binding residues from evolutionary information and sequence conservation.

Huang YF, Chiu LY, Huang CC, Huang CK.

BMC Genomics. 2010 Dec 2;11 Suppl 4:S2. doi: 10.1186/1471-2164-11-S4-S2.

10.

Broad specificity of SR (serine/arginine) proteins in the regulation of alternative splicing of pre-messenger RNA.

Bourgeois CF, Lejeune F, Stévenin J.

Prog Nucleic Acid Res Mol Biol. 2004;78:37-88. Review.

PMID:
15210328
11.

Incorporating amino acids composition and functional domains for identifying bacterial toxin proteins.

Su MG, Huang CH, Lee TY, Chen YJ, Wu HY.

Biomed Res Int. 2014;2014:972692. doi: 10.1155/2014/972692. Epub 2014 Jul 7.

12.

Identification of DNA-binding proteins using support vector machines and evolutionary profiles.

Kumar M, Gromiha MM, Raghava GP.

BMC Bioinformatics. 2007 Nov 27;8:463.

13.

Predicting RNA-binding sites in proteins using the interaction propensity of amino acid triplets.

Yun MR, Byun Y, Han K.

Protein Pept Lett. 2010 Sep;17(9):1102-10.

PMID:
20509851
14.

Characterization and cloning of the human splicing factor 9G8: a novel 35 kDa factor of the serine/arginine protein family.

Cavaloc Y, Popielarz M, Fuchs JP, Gattoni R, Stévenin J.

EMBO J. 1994 Jun 1;13(11):2639-49.

15.

SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites.

Bui VM, Weng SL, Lu CT, Chang TH, Weng JT, Lee TY.

BMC Genomics. 2016 Jan 11;17 Suppl 1:9. doi: 10.1186/s12864-015-2299-1.

17.

The structure of the zinc finger domain from human splicing factor ZNF265 fold.

Plambeck CA, Kwan AH, Adams DJ, Westman BJ, van der Weyden L, Medcalf RL, Morris BJ, Mackay JP.

J Biol Chem. 2003 Jun 20;278(25):22805-11. Epub 2003 Mar 25.

18.

Identification of voltage-gated potassium channel subfamilies from sequence information using support vector machine.

Chen W, Lin H.

Comput Biol Med. 2012 Apr;42(4):504-7. doi: 10.1016/j.compbiomed.2012.01.003. Epub 2012 Jan 31.

PMID:
22297432
19.

Spliceosomal proteomics in Trypanosoma brucei reveal new RNA splicing factors.

Luz Ambrósio D, Lee JH, Panigrahi AK, Nguyen TN, Cicarelli RM, Günzl A.

Eukaryot Cell. 2009 Jul;8(7):990-1000. doi: 10.1128/EC.00075-09. Epub 2009 May 8.

20.

Prediction of protein-RNA binding sites by a random forest method with combined features.

Liu ZP, Wu LY, Wang Y, Zhang XS, Chen L.

Bioinformatics. 2010 Jul 1;26(13):1616-22. doi: 10.1093/bioinformatics/btq253. Epub 2010 May 18.

PMID:
20483814

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