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Items: 1 to 20 of 127

1.

Estimation of absolute protein quantities of unlabeled samples by selected reaction monitoring mass spectrometry.

Ludwig C, Claassen M, Schmidt A, Aebersold R.

Mol Cell Proteomics. 2012 Mar;11(3):M111.013987. doi: 10.1074/mcp.M111.013987. Epub 2011 Nov 20.

2.

Determination of selected reaction monitoring peptide transitions via multiplexed product-ion scan modes.

Cho BK, Koo YD, Kim K, Kang MJ, Lee YY, Kim Y, Park KS, Kim KP, Yi EC.

Rapid Commun Mass Spectrom. 2014 Apr 15;28(7):773-80. doi: 10.1002/rcm.6837.

PMID:
24573808
3.

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans.

Malmström J, Beck M, Schmidt A, Lange V, Deutsch EW, Aebersold R.

Nature. 2009 Aug 6;460(7256):762-5. doi: 10.1038/nature08184. Epub 2009 Jul 15.

4.

Absolute quantification of microbial proteomes at different states by directed mass spectrometry.

Schmidt A, Beck M, Malmström J, Lam H, Claassen M, Campbell D, Aebersold R.

Mol Syst Biol. 2011 Jul 19;7:510. doi: 10.1038/msb.2011.37.

5.

Improved prediction of peptide detectability for targeted proteomics using a rank-based algorithm and organism-specific data.

Qeli E, Omasits U, Goetze S, Stekhoven DJ, Frey JE, Basler K, Wollscheid B, Brunner E, Ahrens CH.

J Proteomics. 2014 Aug 28;108:269-83. doi: 10.1016/j.jprot.2014.05.011. Epub 2014 May 27.

PMID:
24878426
6.

Free computational resources for designing selected reaction monitoring transitions.

Cham Mead JA, Bianco L, Bessant C.

Proteomics. 2010 Mar;10(6):1106-26. doi: 10.1002/pmic.200900396. Review.

PMID:
20077412
7.

Comparison of targeted peptide quantification assays for reductive dehalogenases by selective reaction monitoring (SRM) and precursor reaction monitoring (PRM).

Schiffmann C, Hansen R, Baumann S, Kublik A, Nielsen PH, Adrian L, von Bergen M, Jehmlich N, Seifert J.

Anal Bioanal Chem. 2014 Jan;406(1):283-91. doi: 10.1007/s00216-013-7451-7. Epub 2013 Nov 13.

PMID:
24220761
8.

Multitagging proteomic strategy to estimate protein turnover rates in dynamic systems.

Jayapal KP, Sui S, Philp RJ, Kok YJ, Yap MG, Griffin TJ, Hu WS.

J Proteome Res. 2010 May 7;9(5):2087-97. doi: 10.1021/pr9007738.

PMID:
20184388
9.

The use of selected reaction monitoring in quantitative proteomics.

Holman SW, Sims PF, Eyers CE.

Bioanalysis. 2012 Jul;4(14):1763-86. doi: 10.4155/BIO.12.126. Review.

10.

Selected reaction monitoring for quantitative proteomics: a tutorial.

Lange V, Picotti P, Domon B, Aebersold R.

Mol Syst Biol. 2008;4:222. doi: 10.1038/msb.2008.61. Epub 2008 Oct 14.

11.

Enhanced sensitivity for selected reaction monitoring mass spectrometry-based targeted proteomics using a dual stage electrodynamic ion funnel interface.

Hossain M, Kaleta DT, Robinson EW, Liu T, Zhao R, Page JS, Kelly RT, Moore RJ, Tang K, Camp DG 2nd, Qian WJ, Smith RD.

Mol Cell Proteomics. 2011 Feb;10(2):M000062-MCP201. doi: 10.1074/mcp.M000062-MCP201. Epub 2010 Apr 21.

12.

Application of an LC-MS/MS method for the simultaneous quantification of human intestinal transporter proteins absolute abundance using a QconCAT technique.

Harwood MD, Achour B, Russell MR, Carlson GL, Warhurst G, Rostami-Hodjegan A.

J Pharm Biomed Anal. 2015 Jun 10;110:27-33. doi: 10.1016/j.jpba.2015.02.043. Epub 2015 Feb 28.

13.

18O-labeled proteome reference as global internal standards for targeted quantification by selected reaction monitoring-mass spectrometry.

Kim JS, Fillmore TL, Liu T, Robinson E, Hossain M, Champion BL, Moore RJ, Camp DG 2nd, Smith RD, Qian WJ.

Mol Cell Proteomics. 2011 Dec;10(12):M110.007302. doi: 10.1074/mcp.M110.007302. Epub 2011 Oct 11.

14.

Multi-peptide nLC-PC-IDMS-SRM-based assay for the quantification of biomarkers in the chicken ovarian cancer model.

Andrews Kingon GL, Petitte JN, Muddiman DC, Hawkridge AM.

Methods. 2013 Jun 15;61(3):323-30. doi: 10.1016/j.ymeth.2013.04.004. Epub 2013 Apr 19.

15.

An assessment of current bioinformatic solutions for analyzing LC-MS data acquired by selected reaction monitoring technology.

Brusniak MY, Chu CS, Kusebauch U, Sartain MJ, Watts JD, Moritz RL.

Proteomics. 2012 Apr;12(8):1176-84. doi: 10.1002/pmic.201100571. Review.

16.

Applications of selected reaction monitoring (SRM)-mass spectrometry (MS) for quantitative measurement of signaling pathways.

Zhao Y, Brasier AR.

Methods. 2013 Jun 15;61(3):313-22. doi: 10.1016/j.ymeth.2013.02.001. Epub 2013 Feb 11.

17.

Visual proteomics of the human pathogen Leptospira interrogans.

Beck M, Malmström JA, Lange V, Schmidt A, Deutsch EW, Aebersold R.

Nat Methods. 2009 Nov;6(11):817-23. doi: 10.1038/nmeth.1390. Epub 2009 Oct 18.

18.

Reproducibility of combinatorial peptide ligand libraries for proteome capture evaluated by selected reaction monitoring.

Di Girolamo F, Righetti PG, Soste M, Feng Y, Picotti P.

J Proteomics. 2013 Aug 26;89:215-26. doi: 10.1016/j.jprot.2013.05.037. Epub 2013 Jun 7.

PMID:
23747450
19.

Critical assessment of proteome-wide label-free absolute abundance estimation strategies.

Ahrné E, Molzahn L, Glatter T, Schmidt A.

Proteomics. 2013 Sep;13(17):2567-78. doi: 10.1002/pmic.201300135. Epub 2013 Jul 30.

PMID:
23794183
20.

Absolute quantitation of protein posttranslational modification isoform.

Yang Z, Li N.

Methods Mol Biol. 2015;1306:105-19. doi: 10.1007/978-1-4939-2648-0_8.

PMID:
25930697

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