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Items: 1 to 20 of 78

1.

Calculation of rate spectra from noisy time series data.

Voelz VA, Pande VS.

Proteins. 2012 Feb;80(2):342-51. doi: 10.1002/prot.23171. Epub 2011 Nov 17.

2.

Analyzing complicated protein folding kinetics rapidly by analytical Laplace inversion using a Tikhonov regularization variant.

Mulligan VK, Hadley KC, Chakrabartty A.

Anal Biochem. 2012 Feb 1;421(1):181-90. doi: 10.1016/j.ab.2011.10.050. Epub 2011 Nov 4.

PMID:
22119751
3.

Maximum entropy, analysis of kinetic processes involving chemical and folding-unfolding changes in proteins.

Plaza del Pino IM, Parody-Morreale A, Sanchez-Ruiz JM.

Anal Biochem. 1997 Jan 15;244(2):239-55.

PMID:
9025940
4.

Quantifying uncertainty in NMR T2 spectra using Monte Carlo inversion.

Prange M, Song YQ.

J Magn Reson. 2009 Jan;196(1):54-60. doi: 10.1016/j.jmr.2008.10.008. Epub 2008 Oct 12.

PMID:
18952474
5.
6.

Occam's Razor in sensorimotor learning.

Genewein T, Braun DA.

Proc Biol Sci. 2014 Mar 26;281(1783):20132952. doi: 10.1098/rspb.2013.2952. Print 2014 May 22.

7.
8.

Folding probabilities: a novel approach to folding transitions and the two-dimensional Ising-model.

Lenz P, Zagrovic B, Shapiro J, Pande VS.

J Chem Phys. 2004 Apr 8;120(14):6769-78.

PMID:
15267572
9.
10.

Extracting rate coefficients from single-molecule photon trajectories and FRET efficiency histograms for a fast-folding protein.

Chung HS, Gopich IV, McHale K, Cellmer T, Louis JM, Eaton WA.

J Phys Chem A. 2011 Apr 28;115(16):3642-56. doi: 10.1021/jp1009669. Epub 2010 May 28.

PMID:
20509636
11.

Stabilization of the inverse Laplace transform of multiexponential decay through introduction of a second dimension.

Celik H, Bouhrara M, Reiter DA, Fishbein KW, Spencer RG.

J Magn Reson. 2013 Nov;236:134-9. doi: 10.1016/j.jmr.2013.07.008. Epub 2013 Jul 24.

12.

A hybrid MD-kMC algorithm for folding proteins in explicit solvent.

Peter EK, Shea JE.

Phys Chem Chem Phys. 2014 Apr 14;16(14):6430-40. doi: 10.1039/c3cp55251a. Epub 2014 Feb 5.

PMID:
24499973
13.
14.
15.

Robust reconstruction of the rate constant distribution using the phase function method.

Zhou Y, Zhuang X.

Biophys J. 2006 Dec 1;91(11):4045-53. Epub 2006 Sep 15.

16.

Interplay between native topology and non-native interactions in the folding of tethered proteins.

Krobath H, Faísca PF.

Phys Biol. 2013 Feb;10(1):016002. doi: 10.1088/1478-3975/10/1/016002. Epub 2013 Jan 2.

PMID:
23283414
17.

Folding time distributions as an approach to protein folding kinetics.

Chekmarev SF, Krivov SV, Karplus M.

J Phys Chem B. 2005 Mar 24;109(11):5312-30.

PMID:
16863198
18.

Testing a new Monte Carlo algorithm for protein folding.

Bastolla U, Frauenkron H, Gerstner E, Grassberger P, Nadler W.

Proteins. 1998 Jul 1;32(1):52-66.

PMID:
9672042
19.

Estimating free-energy barrier heights for an ultrafast folding protein from calorimetric and kinetic data.

Godoy-Ruiz R, Henry ER, Kubelka J, Hofrichter J, Muñoz V, Sanchez-Ruiz JM, Eaton WA.

J Phys Chem B. 2008 May 15;112(19):5938-49. doi: 10.1021/jp0757715. Epub 2008 Feb 16.

PMID:
18278894
20.

Master equation approach to folding kinetics of lattice polymers based on conformation networks.

Luo YP, Huang MC, Wu JW, Liaw TM, Lin SC.

J Chem Phys. 2007 Apr 7;126(13):134907.

PMID:
17430067

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