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Items: 1 to 20 of 114

1.

Arginine residues at internal positions in a protein are always charged.

Harms MJ, Schlessman JL, Sue GR, García-Moreno B.

Proc Natl Acad Sci U S A. 2011 Nov 22;108(47):18954-9. doi: 10.1073/pnas.1104808108. Epub 2011 Nov 11.

2.

Structural and thermodynamic consequences of burial of an artificial ion pair in the hydrophobic interior of a protein.

Robinson AC, Castañeda CA, Schlessman JL, García-Moreno EB.

Proc Natl Acad Sci U S A. 2014 Aug 12;111(32):11685-90. doi: 10.1073/pnas.1402900111. Epub 2014 Jul 29.

3.

X-ray and thermodynamic studies of staphylococcal nuclease variants I92E and I92K: insights into polarity of the protein interior.

Nguyen DM, Leila Reynald R, Gittis AG, Lattman EE.

J Mol Biol. 2004 Aug 6;341(2):565-74.

PMID:
15276844
4.

Conformational relaxation and water penetration coupled to ionization of internal groups in proteins.

Damjanović A, Brooks BR, García-Moreno B.

J Phys Chem A. 2011 Apr 28;115(16):4042-53. doi: 10.1021/jp110373f. Epub 2011 Mar 23.

5.

Charges in the hydrophobic interior of proteins.

Isom DG, Castañeda CA, Cannon BR, Velu PD, García-Moreno E B.

Proc Natl Acad Sci U S A. 2010 Sep 14;107(37):16096-100. doi: 10.1073/pnas.1004213107. Epub 2010 Aug 26.

6.

High tolerance for ionizable residues in the hydrophobic interior of proteins.

Isom DG, Cannon BR, Castañeda CA, Robinson A, García-Moreno B.

Proc Natl Acad Sci U S A. 2008 Nov 18;105(46):17784-8. doi: 10.1073/pnas.0805113105. Epub 2008 Nov 12.

7.

Effect of charged amino acid side chain length on lateral cross-strand interactions between carboxylate- and guanidinium-containing residues in a β-hairpin.

Kuo HT, Liu SL, Chiu WC, Fang CJ, Chang HC, Wang WR, Yang PA, Li JH, Huang SJ, Huang SL, Cheng RP.

Amino Acids. 2015 May;47(5):885-98. doi: 10.1007/s00726-015-1916-2. Epub 2015 Feb 3.

PMID:
25646959
8.

Conformational consequences of ionization of Lys, Asp, and Glu buried at position 66 in staphylococcal nuclease.

Karp DA, Stahley MR, García-Moreno B.

Biochemistry. 2010 May 18;49(19):4138-46. doi: 10.1021/bi902114m.

9.

Charges in Hydrophobic Environments: A Strategy for Identifying Alternative States in Proteins.

Robinson AC, Majumdar A, Schlessman JL, García-Moreno E B.

Biochemistry. 2017 Jan 10;56(1):212-218. doi: 10.1021/acs.biochem.6b00843. Epub 2016 Dec 23.

PMID:
28009501
10.

Structural origins of high apparent dielectric constants experienced by ionizable groups in the hydrophobic core of a protein.

Chimenti MS, Castañeda CA, Majumdar A, García-Moreno E B.

J Mol Biol. 2011 Jan 14;405(2):361-77. doi: 10.1016/j.jmb.2010.10.001. Epub 2010 Nov 6.

11.

Experimental pK(a) values of buried residues: analysis with continuum methods and role of water penetration.

Fitch CA, Karp DA, Lee KK, Stites WE, Lattman EE, García-Moreno E B.

Biophys J. 2002 Jun;82(6):3289-304.

13.

Molecular dynamics study of water penetration in staphylococcal nuclease.

Damjanović A, García-Moreno B, Lattman EE, García AE.

Proteins. 2005 Aug 15;60(3):433-49.

PMID:
15971206
14.

A buried lysine that titrates with a normal pKa: role of conformational flexibility at the protein-water interface as a determinant of pKa values.

Harms MJ, Schlessman JL, Chimenti MS, Sue GR, Damjanović A, García-Moreno B.

Protein Sci. 2008 May;17(5):833-45. doi: 10.1110/ps.073397708. Epub 2008 Mar 27.

15.

Large shifts in pKa values of lysine residues buried inside a protein.

Isom DG, Castañeda CA, Cannon BR, García-Moreno B.

Proc Natl Acad Sci U S A. 2011 Mar 29;108(13):5260-5. doi: 10.1073/pnas.1010750108. Epub 2011 Mar 9.

16.

Structural reorganization triggered by charging of Lys residues in the hydrophobic interior of a protein.

Chimenti MS, Khangulov VS, Robinson AC, Heroux A, Majumdar A, Schlessman JL, García-Moreno B.

Structure. 2012 Jun 6;20(6):1071-85. doi: 10.1016/j.str.2012.03.023. Epub 2012 May 25.

17.

Effect of side chain length on intrahelical interactions between carboxylate- and guanidinium-containing amino acids.

Kuo HT, Yang PA, Wang WR, Hsu HC, Wu CH, Ting YT, Weng MH, Kuo LH, Cheng RP.

Amino Acids. 2014 Aug;46(8):1867-83. doi: 10.1007/s00726-014-1737-8. Epub 2014 Apr 18.

PMID:
24744084
18.

Molecular determinants of the pKa values of Asp and Glu residues in staphylococcal nuclease.

Castañeda CA, Fitch CA, Majumdar A, Khangulov V, Schlessman JL, García-Moreno BE.

Proteins. 2009 Nov 15;77(3):570-88. doi: 10.1002/prot.22470.

PMID:
19533744
19.

Backbone relaxation coupled to the ionization of internal groups in proteins: a self-guided Langevin dynamics study.

Damjanović A, Wu X, García-Moreno E B, Brooks BR.

Biophys J. 2008 Nov 1;95(9):4091-101. doi: 10.1529/biophysj.108.130906. Epub 2008 Jul 18.

20.

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