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Items: 1 to 20 of 104

1.

Interspecies translation of disease networks increases robustness and predictive accuracy.

Anvar SY, Tucker A, Vinciotti V, Venema A, van Ommen GJ, van der Maarel SM, Raz V, 't Hoen PA.

PLoS Comput Biol. 2011 Nov;7(11):e1002258. doi: 10.1371/journal.pcbi.1002258. Epub 2011 Nov 3. Erratum in: PLoS Comput Biol. 2011 Nov;7(11). doi: 10.1371/annotation/fc0b4192-6427-4fb3-b347-c66651adf855.

2.

A tree-like Bayesian structure learning algorithm for small-sample datasets from complex biological model systems.

Yin W, Garimalla S, Moreno A, Galinski MR, Styczynski MP.

BMC Syst Biol. 2015 Aug 28;9:49. doi: 10.1186/s12918-015-0194-7.

3.

SAGA: a hybrid search algorithm for Bayesian Network structure learning of transcriptional regulatory networks.

Adabor ES, Acquaah-Mensah GK, Oduro FT.

J Biomed Inform. 2015 Feb;53:27-35. doi: 10.1016/j.jbi.2014.08.010. Epub 2014 Aug 30.

4.

3off2: A network reconstruction algorithm based on 2-point and 3-point information statistics.

Affeldt S, Verny L, Isambert H.

BMC Bioinformatics. 2016 Jan 20;17 Suppl 2:12. doi: 10.1186/s12859-015-0856-x.

5.

Gene expression complex networks: synthesis, identification, and analysis.

Lopes FM, Cesar RM, Costa Lda F.

J Comput Biol. 2011 Oct;18(10):1353-67. doi: 10.1089/cmb.2010.0118. Epub 2011 May 6.

PMID:
21548810
6.

A hybrid Bayesian network learning method for constructing gene networks.

Wang M, Chen Z, Cloutier S.

Comput Biol Chem. 2007 Oct;31(5-6):361-72. Epub 2007 Aug 19.

PMID:
17889617
7.

Computational and experimental approaches for modeling gene regulatory networks.

Goutsias J, Lee NH.

Curr Pharm Des. 2007;13(14):1415-36. Review.

PMID:
17504165
8.

Reverse engineering module networks by PSO-RNN hybrid modeling.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S15. doi: 10.1186/1471-2164-10-S1-S15.

9.

Inferring orthologous gene regulatory networks using interspecies data fusion.

Penfold CA, Millar JB, Wild DL.

Bioinformatics. 2015 Jun 15;31(12):i97-105. doi: 10.1093/bioinformatics/btv267.

10.

Estimating genome-wide gene networks using nonparametric Bayesian network models on massively parallel computers.

Tamada Y, Imoto S, Araki H, Nagasaki M, Print C, Charnock-Jones DS, Miyano S.

IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun;8(3):683-97. doi: 10.1109/TCBB.2010.68.

PMID:
20714027
11.

An integer optimization algorithm for robust identification of non-linear gene regulatory networks.

Chemmangattuvalappil N, Task K, Banerjee I.

BMC Syst Biol. 2012 Sep 2;6:119.

12.

Inferring large-scale gene regulatory networks using a low-order constraint-based algorithm.

Wang M, Augusto Benedito V, Xuechun Zhao P, Udvardi M.

Mol Biosyst. 2010 Jun;6(6):988-98. doi: 10.1039/b917571g. Epub 2010 Feb 19.

PMID:
20485743
13.

Refining regulatory networks through phylogenetic transfer of information.

Zhang X, Moret BM.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Jul-Aug;9(4):1032-45. doi: 10.1109/TCBB.2012.62.

PMID:
22547434
14.

Multi-species network inference improves gene regulatory network reconstruction for early embryonic development in Drosophila.

Joshi A, Beck Y, Michoel T.

J Comput Biol. 2015 Apr;22(4):253-65. doi: 10.1089/cmb.2014.0290.

PMID:
25844666
15.

Novel insights into embryonic stem cell self-renewal revealed through comparative human and mouse systems biology networks.

Dowell KG, Simons AK, Bai H, Kell B, Wang ZZ, Yun K, Hibbs MA.

Stem Cells. 2014 May;32(5):1161-72. doi: 10.1002/stem.1612.

16.

Functional genomics complements quantitative genetics in identifying disease-gene associations.

Guan Y, Ackert-Bicknell CL, Kell B, Troyanskaya OG, Hibbs MA.

PLoS Comput Biol. 2010 Nov 11;6(11):e1000991. doi: 10.1371/journal.pcbi.1000991.

17.

Reconstruction of large-scale gene regulatory networks using Bayesian model averaging.

Kim H, Gelenbe E.

IEEE Trans Nanobioscience. 2012 Sep;11(3):259-65. doi: 10.1109/TNB.2012.2214233.

PMID:
22987132
18.

Reconstructing transcriptional regulatory networks using three-way mutual information and Bayesian networks.

Luo W, Woolf PJ.

Methods Mol Biol. 2010;674:401-18. doi: 10.1007/978-1-60761-854-6_23.

PMID:
20827604
19.

A multiorganism based method for Bayesian gene network estimation.

Dawy Z, Yaacoub E, Nassar M, Abdallah R, Zeineddine HA.

Biosystems. 2011 Mar;103(3):425-34. doi: 10.1016/j.biosystems.2010.12.004. Epub 2010 Dec 17.

PMID:
21168470
20.

Investigating meta-approaches for reconstructing gene networks in a mammalian cellular context.

Nazri A, Lio P.

PLoS One. 2012;7(1):e28713. doi: 10.1371/journal.pone.0028713. Epub 2012 Jan 9.

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