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Items: 1 to 20 of 103

1.

SuperTarget goes quantitative: update on drug-target interactions.

Hecker N, Ahmed J, von Eichborn J, Dunkel M, Macha K, Eckert A, Gilson MK, Bourne PE, Preissner R.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1113-7. doi: 10.1093/nar/gkr912. Epub 2011 Nov 8.

2.

SuperTarget and Matador: resources for exploring drug-target relationships.

Günther S, Kuhn M, Dunkel M, Campillos M, Senger C, Petsalaki E, Ahmed J, Urdiales EG, Gewiess A, Jensen LJ, Schneider R, Skoblo R, Russell RB, Bourne PE, Bork P, Preissner R.

Nucleic Acids Res. 2008 Jan;36(Database issue):D919-22. Epub 2007 Oct 16.

3.

STITCH: interaction networks of chemicals and proteins.

Kuhn M, von Mering C, Campillos M, Jensen LJ, Bork P.

Nucleic Acids Res. 2008 Jan;36(Database issue):D684-8. Epub 2007 Dec 15.

4.

DTome: a web-based tool for drug-target interactome construction.

Sun J, Wu Y, Xu H, Zhao Z.

BMC Bioinformatics. 2012 Jun 11;13 Suppl 9:S7. doi: 10.1186/1471-2105-13-S9-S7.

5.

The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development.

Kunz M, Liang C, Nilla S, Cecil A, Dandekar T.

Database (Oxford). 2016 Apr 7;2016. pii: baw041. doi: 10.1093/database/baw041. Print 2016.

6.

PROMISCUOUS: a database for network-based drug-repositioning.

von Eichborn J, Murgueitio MS, Dunkel M, Koerner S, Bourne PE, Preissner R.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1060-6. doi: 10.1093/nar/gkq1037. Epub 2010 Nov 10.

7.

DrugBank: a knowledgebase for drugs, drug actions and drug targets.

Wishart DS, Knox C, Guo AC, Cheng D, Shrivastava S, Tzur D, Gautam B, Hassanali M.

Nucleic Acids Res. 2008 Jan;36(Database issue):D901-6. Epub 2007 Nov 29.

8.

SuperPred: update on drug classification and target prediction.

Nickel J, Gohlke BO, Erehman J, Banerjee P, Rong WW, Goede A, Dunkel M, Preissner R.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W26-31. doi: 10.1093/nar/gku477. Epub 2014 May 30.

9.

FragmentStore--a comprehensive database of fragments linking metabolites, toxic molecules and drugs.

Ahmed J, Worth CL, Thaben P, Matzig C, Blasse C, Dunkel M, Preissner R.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1049-54. doi: 10.1093/nar/gkq969. Epub 2010 Oct 21.

10.

IPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis.

Zhang F, Drabier R.

BMC Bioinformatics. 2012;13 Suppl 15:S7. doi: 10.1186/1471-2105-13-S15-S7. Epub 2012 Sep 11.

11.

Prediction of drug-target interaction by label propagation with mutual interaction information derived from heterogeneous network.

Yan XY, Zhang SW, Zhang SY.

Mol Biosyst. 2016 Feb;12(2):520-31. doi: 10.1039/c5mb00615e.

PMID:
26675534
12.

Computational probing protein-protein interactions targeting small molecules.

Wang YC, Chen SL, Deng NY, Wang Y.

Bioinformatics. 2016 Jan 15;32(2):226-34. doi: 10.1093/bioinformatics/btv528. Epub 2015 Sep 28.

PMID:
26415726
13.

Predicting new indications for approved drugs using a proteochemometric method.

Dakshanamurthy S, Issa NT, Assefnia S, Seshasayee A, Peters OJ, Madhavan S, Uren A, Brown ML, Byers SW.

J Med Chem. 2012 Aug 9;55(15):6832-48. doi: 10.1021/jm300576q. Epub 2012 Jul 25.

14.

DrugBank: a comprehensive resource for in silico drug discovery and exploration.

Wishart DS, Knox C, Guo AC, Shrivastava S, Hassanali M, Stothard P, Chang Z, Woolsey J.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D668-72.

15.

PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach.

Liu X, Ouyang S, Yu B, Liu Y, Huang K, Gong J, Zheng S, Li Z, Li H, Jiang H.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W609-14. doi: 10.1093/nar/gkq300. Epub 2010 Apr 29.

16.

ChEMBL: a large-scale bioactivity database for drug discovery.

Gaulton A, Bellis LJ, Bento AP, Chambers J, Davies M, Hersey A, Light Y, McGlinchey S, Michalovich D, Al-Lazikani B, Overington JP.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1100-7. doi: 10.1093/nar/gkr777. Epub 2011 Sep 23.

17.

TDR Targets: a chemogenomics resource for neglected diseases.

Magariños MP, Carmona SJ, Crowther GJ, Ralph SA, Roos DS, Shanmugam D, Van Voorhis WC, Agüero F.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1118-27. doi: 10.1093/nar/gkr1053. Epub 2011 Nov 23.

18.

A comprehensive analysis of the influence of drug binding kinetics on drug action at molecular and systems levels.

Yin N, Pei J, Lai L.

Mol Biosyst. 2013 Jun;9(6):1381-9. doi: 10.1039/c3mb25471b. Epub 2013 Mar 11.

PMID:
23478789
19.

PDTD: a web-accessible protein database for drug target identification.

Gao Z, Li H, Zhang H, Liu X, Kang L, Luo X, Zhu W, Chen K, Wang X, Jiang H.

BMC Bioinformatics. 2008 Feb 19;9:104. doi: 10.1186/1471-2105-9-104.

20.

Systems biology approaches and tools for analysis of interactomes and multi-target drugs.

Schrattenholz A, Groebe K, Soskic V.

Methods Mol Biol. 2010;662:29-58. doi: 10.1007/978-1-60761-800-3_2. Review.

PMID:
20824465

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