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Items: 1 to 20 of 66

1.

A database for chemical proteomics: ChEBI.

de Matos P, Adams N, Hastings J, Moreno P, Steinbeck C.

Methods Mol Biol. 2012;803:273-96. doi: 10.1007/978-1-61779-364-6_19.

PMID:
22065232
2.

ChEBI: a database and ontology for chemical entities of biological interest.

Degtyarenko K, de Matos P, Ennis M, Hastings J, Zbinden M, McNaught A, Alcántara R, Darsow M, Guedj M, Ashburner M.

Nucleic Acids Res. 2008 Jan;36(Database issue):D344-50. Epub 2007 Oct 11.

3.

Chemical Entities of Biological Interest: an update.

de Matos P, Alcántara R, Dekker A, Ennis M, Hastings J, Haug K, Spiteri I, Turner S, Steinbeck C.

Nucleic Acids Res. 2010 Jan;38(Database issue):D249-54. doi: 10.1093/nar/gkp886. Epub 2009 Oct 23.

4.

"Good annotation practice" for chemical data in biology.

Degtyarenko K, Ennis M, Garavelli JS.

In Silico Biol. 2007;7(2 Suppl):S45-56.

PMID:
17822390
5.

libChEBI: an API for accessing the ChEBI database.

Swainston N, Hastings J, Dekker A, Muthukrishnan V, May J, Steinbeck C, Mendes P.

J Cheminform. 2016 Mar 1;8:11. doi: 10.1186/s13321-016-0123-9. eCollection 2016.

6.

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013.

Hastings J, de Matos P, Dekker A, Ennis M, Harsha B, Kale N, Muthukrishnan V, Owen G, Turner S, Williams M, Steinbeck C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D456-63. doi: 10.1093/nar/gks1146. Epub 2012 Nov 24.

7.

The RESID Database of Protein Modifications as a resource and annotation tool.

Garavelli JS.

Proteomics. 2004 Jun;4(6):1527-33.

PMID:
15174122
8.

ChEBI: an open bioinformatics and cheminformatics resource.

Degtyarenko K, Hastings J, de Matos P, Ennis M.

Curr Protoc Bioinformatics. 2009 Jun;Chapter 14:Unit 14.9. doi: 10.1002/0471250953.bi1409s26.

PMID:
19496059
9.

Accessing and using chemical property databases.

Hastings J, Josephs Z, Steinbeck C.

Methods Mol Biol. 2012;929:193-219.

PMID:
23007431
10.

Bioactivity-guided navigation of chemical space.

Bon RS, Waldmann H.

Acc Chem Res. 2010 Aug 17;43(8):1103-14. doi: 10.1021/ar100014h.

PMID:
20481515
11.

DrugBank: a comprehensive resource for in silico drug discovery and exploration.

Wishart DS, Knox C, Guo AC, Shrivastava S, Hassanali M, Stothard P, Chang Z, Woolsey J.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D668-72.

12.

BiNChE: a web tool and library for chemical enrichment analysis based on the ChEBI ontology.

Moreno P, Beisken S, Harsha B, Muthukrishnan V, Tudose I, Dekker A, Dornfeldt S, Taruttis F, Grosse I, Hastings J, Neumann S, Steinbeck C.

BMC Bioinformatics. 2015 Feb 21;16:56. doi: 10.1186/s12859-015-0486-3.

13.

LeishCyc: a biochemical pathways database for Leishmania major.

Doyle MA, MacRae JI, De Souza DP, Saunders EC, McConville MJ, Likić VA.

BMC Syst Biol. 2009 Jun 5;3:57. doi: 10.1186/1752-0509-3-57.

14.

PRIDE and "Database on Demand" as valuable tools for computational proteomics.

Vizcaíno JA, Reisinger F, Côté R, Martens L.

Methods Mol Biol. 2011;696:93-105. doi: 10.1007/978-1-60761-987-1_6.

PMID:
21063943
15.

SPLASH: systematic proteomics laboratory analysis and storage hub.

Lo SL, You T, Lin Q, Joshi SB, Chung MC, Hew CL.

Proteomics. 2006 Mar;6(6):1758-69.

PMID:
16456885
16.

The European Bioinformatics Institute's data resources: towards systems biology.

Brooksbank C, Cameron G, Thornton J.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D46-53.

17.

Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology.

Hill DP, Adams N, Bada M, Batchelor C, Berardini TZ, Dietze H, Drabkin HJ, Ennis M, Foulger RE, Harris MA, Hastings J, Kale NS, de Matos P, Mungall CJ, Owen G, Roncaglia P, Steinbeck C, Turner S, Lomax J.

BMC Genomics. 2013 Jul 29;14:513. doi: 10.1186/1471-2164-14-513.

18.

PDTD: a web-accessible protein database for drug target identification.

Gao Z, Li H, Zhang H, Liu X, Kang L, Luo X, Zhu W, Chen K, Wang X, Jiang H.

BMC Bioinformatics. 2008 Feb 19;9:104. doi: 10.1186/1471-2105-9-104.

19.

Quality, not quantity: the role of natural products and chemical proteomics in modern drug discovery.

Piggott AM, Karuso P.

Comb Chem High Throughput Screen. 2004 Nov;7(7):607-30. Review.

PMID:
15578924
20.

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