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Items: 1 to 20 of 152

1.

Analysis of two marine metagenomes reveals the diversity of plasmids in oceanic environments.

Ma Y, Paulsen IT, Palenik B.

Environ Microbiol. 2012 Feb;14(2):453-66. doi: 10.1111/j.1462-2920.2011.02633.x. Epub 2011 Nov 8.

PMID:
22059529
2.

Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity.

Palenik B, Ren Q, Tai V, Paulsen IT.

Environ Microbiol. 2009 Feb;11(2):349-59. doi: 10.1111/j.1462-2920.2008.01772.x.

PMID:
19196269
3.

Comparative metagenomics of microbial traits within oceanic viral communities.

Sharon I, Battchikova N, Aro EM, Giglione C, Meinnel T, Glaser F, Pinter RY, Breitbart M, Rohwer F, Béjà O.

ISME J. 2011 Jul;5(7):1178-90. doi: 10.1038/ismej.2011.2. Epub 2011 Feb 10.

4.

Analysis of 23S rRNA genes in metagenomes - a case study from the Global Ocean Sampling Expedition.

Yilmaz P, Kottmann R, Pruesse E, Quast C, Glöckner FO.

Syst Appl Microbiol. 2011 Sep;34(6):462-9. doi: 10.1016/j.syapm.2011.04.005. Epub 2011 Jun 14.

PMID:
21676569
5.

Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges.

Huang S, Wang K, Jiao N, Chen F.

Environ Microbiol. 2012 Feb;14(2):540-58. doi: 10.1111/j.1462-2920.2011.02667.x. Epub 2011 Dec 22.

PMID:
22188618
6.

Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant.

Schlüter A, Krause L, Szczepanowski R, Goesmann A, Pühler A.

J Biotechnol. 2008 Aug 31;136(1-2):65-76. doi: 10.1016/j.jbiotec.2008.03.017. Epub 2008 Apr 8.

PMID:
18603322
7.

Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep.

Smedile F, Messina E, La Cono V, Tsoy O, Monticelli LS, Borghini M, Giuliano L, Golyshin PN, Mushegian A, Yakimov MM.

Environ Microbiol. 2013 Jan;15(1):167-82. doi: 10.1111/j.1462-2920.2012.02827.x. Epub 2012 Jul 25.

PMID:
22827264
8.

Exploration of community traits as ecological markers in microbial metagenomes.

Barberán A, Fernández-Guerra A, Bohannan BJ, Casamayor EO.

Mol Ecol. 2012 Apr;21(8):1909-17. doi: 10.1111/j.1365-294X.2011.05383.x. Epub 2011 Nov 28.

PMID:
22121910
9.

Ubiquitous cyanobacterial podoviruses in the global oceans unveiled through viral DNA polymerase gene sequences.

Huang S, Wilhelm SW, Jiao N, Chen F.

ISME J. 2010 Oct;4(10):1243-51. doi: 10.1038/ismej.2010.56. Epub 2010 May 13.

PMID:
20463765
10.

Diverse circovirus-like genome architectures revealed by environmental metagenomics.

Rosario K, Duffy S, Breitbart M.

J Gen Virol. 2009 Oct;90(Pt 10):2418-24. doi: 10.1099/vir.0.012955-0. Epub 2009 Jul 1.

PMID:
19570956
11.
12.

Cyanobacterial assimilatory nitrate reductase gene diversity in coastal and oligotrophic marine environments.

Jenkins BD, Zehr JP, Gibson A, Campbell L.

Environ Microbiol. 2006 Dec;8(12):2083-95.

PMID:
17107550
13.

Metagenomic marine nitrogen fixation--feast or famine?

Johnston AW, Li Y, Ogilvie L.

Trends Microbiol. 2005 Sep;13(9):416-20. Review.

PMID:
16043354
14.

Genome content of uncultivated marine Roseobacters in the surface ocean.

Luo H, Löytynoja A, Moran MA.

Environ Microbiol. 2012 Jan;14(1):41-51. doi: 10.1111/j.1462-2920.2011.02528.x. Epub 2011 Aug 19.

PMID:
21854517
15.

Construction and screening of marine metagenomic libraries.

Weiland N, Löscher C, Metzger R, Schmitz R.

Methods Mol Biol. 2010;668:51-65. doi: 10.1007/978-1-60761-823-2_3.

PMID:
20830555
16.

Biodiversity and biogeography of phages in modern stromatolites and thrombolites.

Desnues C, Rodriguez-Brito B, Rayhawk S, Kelley S, Tran T, Haynes M, Liu H, Furlan M, Wegley L, Chau B, Ruan Y, Hall D, Angly FE, Edwards RA, Li L, Thurber RV, Reid RP, Siefert J, Souza V, Valentine DL, Swan BK, Breitbart M, Rohwer F.

Nature. 2008 Mar 20;452(7185):340-3. doi: 10.1038/nature06735. Epub 2008 Mar 2.

PMID:
18311127
17.

Temporal variation of Synechococcus clades at a coastal Pacific Ocean monitoring site.

Tai V, Palenik B.

ISME J. 2009 Aug;3(8):903-15. doi: 10.1038/ismej.2009.35. Epub 2009 Apr 9.

PMID:
19360028
18.

Diverse and dynamic populations of cyanobacterial podoviruses in the Chesapeake Bay unveiled through DNA polymerase gene sequences.

Chen F, Wang K, Huang S, Cai H, Zhao M, Jiao N, Wommack KE.

Environ Microbiol. 2009 Nov;11(11):2884-92. doi: 10.1111/j.1462-2920.2009.02033.x. Epub 2009 Aug 24.

PMID:
19703219
19.

The phylogenetic diversity of metagenomes.

Kembel SW, Eisen JA, Pollard KS, Green JL.

PLoS One. 2011;6(8):e23214. doi: 10.1371/journal.pone.0023214. Epub 2011 Aug 31.

20.

Phylogeographic separation of marine and soil myxobacteria at high levels of classification.

Jiang DM, Kato C, Zhou XW, Wu ZH, Sato T, Li YZ.

ISME J. 2010 Dec;4(12):1520-30. doi: 10.1038/ismej.2010.84. Epub 2010 Jul 1.

PMID:
20596070

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