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Items: 1 to 20 of 76

1.

Is GC bias in the nuclear genome of the carnivorous plant Utricularia driven by ROS-based mutation and biased gene conversion?

Ibarra-Laclette E, Albert VA, Herrera-Estrella A, Herrera-Estrella L.

Plant Signal Behav. 2011 Nov;6(11):1631-4. doi: 10.4161/psb.6.11.17657. Epub 2011 Nov 1.

2.

Transcriptomics and molecular evolutionary rate analysis of the bladderwort (Utricularia), a carnivorous plant with a minimal genome.

Ibarra-Laclette E, Albert VA, Pérez-Torres CA, Zamudio-Hernández F, Ortega-Estrada Mde J, Herrera-Estrella A, Herrera-Estrella L.

BMC Plant Biol. 2011 Jun 3;11:101. doi: 10.1186/1471-2229-11-101.

3.

The carnivorous bladderwort (Utricularia, Lentibulariaceae): a system inflates.

Albert VA, Jobson RW, Michael TP, Taylor DJ.

J Exp Bot. 2010;61(1):5-9. doi: 10.1093/jxb/erp349.

PMID:
20007200
4.

Smallest angiosperm genomes found in lentibulariaceae, with chromosomes of bacterial size.

Greilhuber J, Borsch T, Müller K, Worberg A, Porembski S, Barthlott W.

Plant Biol (Stuttg). 2006 Nov;8(6):770-7.

PMID:
17203433
5.

Disproportional plastome-wide increase of substitution rates and relaxed purifying selection in genes of carnivorous Lentibulariaceae.

Wicke S, Schäferhoff B, dePamphilis CW, Müller KF.

Mol Biol Evol. 2014 Mar;31(3):529-45. doi: 10.1093/molbev/mst261. Epub 2013 Dec 15.

PMID:
24344209
6.

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants.

Drouin G, Daoud H, Xia J.

Mol Phylogenet Evol. 2008 Dec;49(3):827-31. doi: 10.1016/j.ympev.2008.09.009. Epub 2008 Sep 21.

PMID:
18838124
7.

The transcriptome of Utricularia vulgaris, a rootless plant with minimalist genome, reveals extreme alternative splicing and only moderate sequence similarity with Utricularia gibba.

Bárta J, Stone JD, Pech J, Sirová D, Adamec L, Campbell MA, Štorchová H.

BMC Plant Biol. 2015 Mar 7;15:78. doi: 10.1186/s12870-015-0467-8.

8.

The mitochondrial genome of the terrestrial carnivorous plant Utricularia reniformis (Lentibulariaceae): Structure, comparative analysis and evolutionary landmarks.

Silva SR, Alvarenga DO, Aranguren Y, Penha HA, Fernandes CC, Pinheiro DG, Oliveira MT, Michael TP, Miranda VFO, Varani AM.

PLoS One. 2017 Jul 19;12(7):e0180484. doi: 10.1371/journal.pone.0180484. eCollection 2017.

9.

History of plastid DNA insertions reveals weak deletion and at mutation biases in angiosperm mitochondrial genomes.

Sloan DB, Wu Z.

Genome Biol Evol. 2014 Nov 21;6(12):3210-21. doi: 10.1093/gbe/evu253.

10.

Genome-wide analysis of adaptive molecular evolution in the carnivorous plant Utricularia gibba.

Carretero-Paulet L, Chang TH, Librado P, Ibarra-Laclette E, Herrera-Estrella L, Rozas J, Albert VA.

Genome Biol Evol. 2015 Jan 9;7(2):444-56. doi: 10.1093/gbe/evu288.

11.

Genome size and genomic GC content evolution in the miniature genome-sized family Lentibulariaceae.

Veleba A, Bureš P, Adamec L, Šmarda P, Lipnerová I, Horová L.

New Phytol. 2014 Jul;203(1):22-8. doi: 10.1111/nph.12790. Epub 2014 Mar 24. No abstract available.

12.

Architecture and evolution of a minute plant genome.

Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, Fernández-Cortés A, Arteaga-Vázquez M, Góngora-Castillo E, Acevedo-Hernández G, Schuster SC, Himmelbauer H, Minoche AE, Xu S, Lynch M, Oropeza-Aburto A, Cervantes-Pérez SA, de Jesús Ortega-Estrada M, Cervantes-Luevano JI, Michael TP, Mockler T, Bryant D, Herrera-Estrella A, Albert VA, Herrera-Estrella L.

Nature. 2013 Jun 6;498(7452):94-8. doi: 10.1038/nature12132. Epub 2013 May 12.

13.

Expected relationship between the silent substitution rate and the GC content: implications for the evolution of isochores.

Piganeau G, Mouchiroud D, Duret L, Gautier C.

J Mol Evol. 2002 Jan;54(1):129-33.

PMID:
11734906
14.

GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis.

Glémin S, Clément Y, David J, Ressayre A.

Trends Genet. 2014 Jul;30(7):263-70. doi: 10.1016/j.tig.2014.05.002. Epub 2014 Jun 7. Review.

PMID:
24916172
15.
16.

Evolutionary forces affecting synonymous variations in plant genomes.

Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, Nabholz B, Sabot F, Sauné L, Ardisson M, Bacilieri R, Besnard G, Berger A, Cardi C, De Bellis F, Fouet O, Jourda C, Khadari B, Lanaud C, Leroy T, Pot D, Sauvage C, Scarcelli N, Tregear J, Vigouroux Y, Yahiaoui N, Ruiz M, Santoni S, Labouisse JP, Pham JL, David J, Glémin S.

PLoS Genet. 2017 May 22;13(5):e1006799. doi: 10.1371/journal.pgen.1006799. eCollection 2017 May.

17.

GC-biased gene conversion and selection affect GC content in the Oryza genus (rice).

Muyle A, Serres-Giardi L, Ressayre A, Escobar J, Glémin S.

Mol Biol Evol. 2011 Sep;28(9):2695-706. doi: 10.1093/molbev/msr104. Epub 2011 Apr 18.

PMID:
21504892
18.

GC-biased gene conversion impacts ribosomal DNA evolution in vertebrates, angiosperms, and other eukaryotes.

Escobar JS, Glémin S, Galtier N.

Mol Biol Evol. 2011 Sep;28(9):2561-75. doi: 10.1093/molbev/msr079. Epub 2011 Mar 28.

PMID:
21444650
19.

The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes.

Qiu YL, Lee J, Bernasconi-Quadroni F, Soltis DE, Soltis PS, Zanis M, Zimmer EA, Chen Z, Savolainen V, Chase MW.

Nature. 1999 Nov 25;402(6760):404-7. Erratum in: Nature 2000 May 4;405(6782):101.

PMID:
10586879
20.

GC-compositional strand bias around transcription start sites in plants and fungi.

Fujimori S, Washio T, Tomita M.

BMC Genomics. 2005 Feb 28;6:26.

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