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Items: 1 to 20 of 80

1.

What can we learn from single molecule trajectories?

Ruprecht V, Axmann M, Wieser S, Schutz GJ.

Curr Protein Pept Sci. 2011 Dec;12(8):714-24. Review.

PMID:
22044145
2.

Versatile analysis of single-molecule tracking data by comprehensive testing against Monte Carlo simulations.

Wieser S, Axmann M, Schütz GJ.

Biophys J. 2008 Dec 15;95(12):5988-6001. doi: 10.1529/biophysj.108.141655. Epub 2008 Sep 19.

3.

Microscopic simulation of membrane molecule diffusion on corralled membrane surfaces.

Niehaus AM, Vlachos DG, Edwards JS, Plechac P, Tribe R.

Biophys J. 2008 Mar 1;94(5):1551-64. Epub 2007 Nov 9.

4.

Correlating anomalous diffusion with lipid bilayer membrane structure using single molecule tracking and atomic force microscopy.

Skaug MJ, Faller R, Longo ML.

J Chem Phys. 2011 Jun 7;134(21):215101. doi: 10.1063/1.3596377.

5.

Tracking single molecules in the live cell plasma membrane-Do's and Don't's.

Wieser S, Schütz GJ.

Methods. 2008 Oct;46(2):131-40. doi: 10.1016/j.ymeth.2008.06.010. Epub 2008 Jul 15.

PMID:
18634880
6.

Single-molecule tracking.

Vrljic M, Nishimura SY, Moerner WE.

Methods Mol Biol. 2007;398:193-219. doi: 10.1007/978-1-59745-513-8_14.

PMID:
18214382
7.

Spot variation fluorescence correlation spectroscopy allows for superresolution chronoscopy of confinement times in membranes.

Ruprecht V, Wieser S, Marguet D, Schütz GJ.

Biophys J. 2011 Jun 8;100(11):2839-45. doi: 10.1016/j.bpj.2011.04.035.

8.

Mapping molecular diffusion in the plasma membrane by Multiple-Target Tracing (MTT).

Rouger V, Bertaux N, Trombik T, Mailfert S, Billaudeau C, Marguet D, Sergé A.

J Vis Exp. 2012 May 27;(63):e3599. doi: 10.3791/3599.

9.

Path ensembles and path sampling in nonequilibrium stochastic systems.

Harland B, Sun SX.

J Chem Phys. 2007 Sep 14;127(10):104103.

PMID:
17867733
10.
11.

Statistical analysis of lateral diffusion and multistate kinetics in single-molecule imaging.

Matsuoka S, Shibata T, Ueda M.

Biophys J. 2009 Aug 19;97(4):1115-24. doi: 10.1016/j.bpj.2009.06.007.

12.

Spatial modeling of dimerization reaction dynamics in the plasma membrane: Monte Carlo vs. continuum differential equations.

Mayawala K, Vlachos DG, Edwards JS.

Biophys Chem. 2006 Jun 1;121(3):194-208. Epub 2006 Feb 28.

PMID:
16504372
13.

Single-particle tracking: effects of corrals.

Saxton MJ.

Biophys J. 1995 Aug;69(2):389-98.

14.

A quantitative comparison of single-dye tracking analysis tools using Monte Carlo simulations.

Weimann L, Ganzinger KA, McColl J, Irvine KL, Davis SJ, Gay NJ, Bryant CE, Klenerman D.

PLoS One. 2013 May 30;8(5):e64287. doi: 10.1371/journal.pone.0064287. Print 2013.

15.

Detection of non-Brownian diffusion in the cell membrane in single molecule tracking.

Ritchie K, Shan XY, Kondo J, Iwasawa K, Fujiwara T, Kusumi A.

Biophys J. 2005 Mar;88(3):2266-77. Epub 2004 Dec 21.

16.

Modeling 2D and 3D diffusion.

Saxton MJ.

Methods Mol Biol. 2007;400:295-321. Review.

PMID:
17951742
17.

Computer simulations of protein diffusion in compartmentalized cell membranes.

Sung BJ, Yethiraj A.

Biophys J. 2009 Jul 22;97(2):472-9. doi: 10.1016/j.bpj.2009.04.060.

18.

Regulation of protein mobility in cell membranes: a dynamic corral model.

Leitner DM, Brown FL, Wilson KR.

Biophys J. 2000 Jan;78(1):125-35.

19.

First-passage kinetic Monte Carlo method.

Oppelstrup T, Bulatov VV, Donev A, Kalos MH, Gilmer GH, Sadigh B.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Dec;80(6 Pt 2):066701. Epub 2009 Dec 1.

PMID:
20365296
20.

Resolving the kinetics of lipid, protein and peptide diffusion in membranes.

Sanderson JM.

Mol Membr Biol. 2012 Aug;29(5):118-43. doi: 10.3109/09687688.2012.678018. Epub 2012 May 14. Review.

PMID:
22582994

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