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Items: 1 to 20 of 104

1.

Hydration studies on the archaeal protein Sso7d using NMR measurements and MD simulations.

Bernini A, Spiga O, Consonni R, Arosio I, Fusi P, Cirri S, Guagliardi A, Niccolai N.

BMC Struct Biol. 2011 Oct 21;11:44. doi: 10.1186/1472-6807-11-44.

2.

NMR studies on the surface accessibility of the archaeal protein Sso7d by using TEMPOL and Gd(III)(DTPA-BMA) as paramagnetic probes.

Bernini A, Venditti V, Spiga O, Ciutti A, Prischi F, Consonni R, Zetta L, Arosio I, Fusi P, Guagliardi A, Niccolai N.

Biophys Chem. 2008 Oct;137(2-3):71-5. doi: 10.1016/j.bpc.2008.07.003. Epub 2008 Jul 16.

PMID:
18678440
3.

Carboxyl pK(a) values, ion pairs, hydrogen bonding, and the pH-dependence of folding the hyperthermophile proteins Sac7d and Sso7d.

Clark AT, Smith K, Muhandiram R, Edmondson SP, Shriver JW.

J Mol Biol. 2007 Sep 28;372(4):992-1008. Epub 2007 Jul 10.

4.

Structural characterization of the functional regions in the archaeal protein Sso7d.

Renzone G, Vitale RM, Scaloni A, Rossi M, Amodeo P, Guagliardi A.

Proteins. 2007 Apr 1;67(1):189-97.

PMID:
17243156
5.

NMR and molecular dynamics studies of the hydration of a zinc finger-DNA complex.

Tsui V, Radhakrishnan I, Wright PE, Case DA.

J Mol Biol. 2000 Oct 6;302(5):1101-17.

PMID:
11183777
6.

Thermodynamic characterization of non-sequence-specific DNA-binding by the Sso7d protein from Sulfolobus solfataricus.

Lundbäck T, Hansson H, Knapp S, Ladenstein R, Härd T.

J Mol Biol. 1998 Mar 6;276(4):775-86.

PMID:
9500918
7.

Insights into the thermal stabilization and conformational transitions of DNA by hyperthermophile protein Sso7d: molecular dynamics simulations and MM-PBSA analysis.

Chen L, Zheng QC, Yu LY, Chu WT, Zhang JL, Xue Q, Zhang HX, Sun CC.

J Biomol Struct Dyn. 2012;30(6):716-27. Epub 2012 Jun 26.

PMID:
22731116
8.
10.

Structural and dynamic effects of alpha-helix deletion in Sso7d: implications for protein thermal stability.

Merlino A, Graziano G, Mazzarella L.

Proteins. 2004 Dec 1;57(4):692-701.

PMID:
15317021
11.

DNA-binding surface of the Sso7d protein from Sulfolobus solfataricus.

Baumann H, Knapp S, Karshikoff A, Ladenstein R, Härd T.

J Mol Biol. 1995 Apr 14;247(5):840-6.

PMID:
7723036
12.

Highly stable binding proteins derived from the hyperthermophilic Sso7d scaffold.

Gera N, Hussain M, Wright RC, Rao BM.

J Mol Biol. 2011 Jun 17;409(4):601-16. doi: 10.1016/j.jmb.2011.04.020. Epub 2011 Apr 16.

PMID:
21515282
13.
14.

Crystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs.

Su S, Gao YG, Robinson H, Liaw YC, Edmondson SP, Shriver JW, Wang AH.

J Mol Biol. 2000 Oct 27;303(3):395-403.

PMID:
11031116
15.

Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator.

Bonvin AM, Sunnerhagen M, Otting G, van Gunsteren WF.

J Mol Biol. 1998 Oct 2;282(4):859-73.

PMID:
9743632
16.

Study of intermolecular contacts in the proline-rich homeodomain (PRH)-DNA complex using molecular dynamics simulations.

Jalili S, Karami L.

Eur Biophys J. 2012 Mar;41(3):329-40. doi: 10.1007/s00249-012-0790-z. Epub 2012 Feb 4.

PMID:
22311606
17.

In vitro DNA binding of the archaeal protein Sso7d induces negative supercoiling at temperatures typical for thermophilic growth.

López-García P, Knapp S, Ladenstein R, Forterre P.

Nucleic Acids Res. 1998 May 15;26(10):2322-8.

18.

Photoreactivation of DNA by an archaeal nucleoprotein Sso7d.

Tashiro R, Wang AH, Sugiyama H.

Proc Natl Acad Sci U S A. 2006 Nov 7;103(45):16655-9. Epub 2006 Oct 30.

19.
20.

Solution structure and DNA-binding properties of a thermostable protein from the archaeon Sulfolobus solfataricus.

Baumann H, Knapp S, Lundbäck T, Ladenstein R, Härd T.

Nat Struct Biol. 1994 Nov;1(11):808-19.

PMID:
7634092

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