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Items: 1 to 20 of 114

1.

pcrEfficiency: a Web tool for PCR amplification efficiency prediction.

Mallona I, Weiss J, Egea-Cortines M.

BMC Bioinformatics. 2011 Oct 20;12:404. doi: 10.1186/1471-2105-12-404.

2.

URPD: a specific product primer design tool.

Chuang LY, Cheng YH, Yang CH.

BMC Res Notes. 2012 Jun 19;5:306. doi: 10.1186/1756-0500-5-306.

3.

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.

Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, Ruangrit U, Agavatpanitch G, Tongsima S.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S4. doi: 10.1186/1471-2164-10-S3-S4.

4.

PRaTo: a web-tool to select optimal primer pairs for qPCR.

Nonis A, Scortegagna M, Nonis A, Ruperti B.

Biochem Biophys Res Commun. 2011 Dec 2;415(4):707-8. doi: 10.1016/j.bbrc.2011.10.148. Epub 2011 Nov 6.

PMID:
22086170
5.

[Quantitative PCR in the diagnosis of Leishmania].

Mortarino M, Franceschi A, Mancianti F, Bazzocchi C, Genchi C, Bandi C.

Parassitologia. 2004 Jun;46(1-2):163-7. Review. Italian.

PMID:
15305709
6.

LOMA: a fast method to generate efficient tagged-random primers despite amplification bias of random PCR on pathogens.

Lee WH, Wong CW, Leong WY, Miller LD, Sung WK.

BMC Bioinformatics. 2008 Sep 10;9:368. doi: 10.1186/1471-2105-9-368.

7.

Java web tools for PCR, in silico PCR, and oligonucleotide assembly and analysis.

Kalendar R, Lee D, Schulman AH.

Genomics. 2011 Aug;98(2):137-44. doi: 10.1016/j.ygeno.2011.04.009. Epub 2011 May 3.

8.

methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.

Pattyn F, Hoebeeck J, Robbrecht P, Michels E, De Paepe A, Bottu G, Coornaert D, Herzog R, Speleman F, Vandesompele J.

BMC Bioinformatics. 2006 Nov 9;7:496.

9.

The BiSearch web server.

Arányi T, Váradi A, Simon I, Tusnády GE.

BMC Bioinformatics. 2006 Oct 5;7:431.

10.

In silico PCR primer designing and validation.

Kumar A, Chordia N.

Methods Mol Biol. 2015;1275:143-51. doi: 10.1007/978-1-4939-2365-6_10.

PMID:
25697657
11.

STITCHER: A web resource for high-throughput design of primers for overlapping PCR applications.

O'Halloran DM.

Biotechniques. 2015 Jun 1;58(6):325-8. doi: 10.2144/000114301. eCollection 2015 Jun.

12.

PathoGene: a pathogen coding sequence discovery and analysis resource.

Ng KW, Lawson J, Garner HR.

Biotechniques. 2004 Aug;37(2):218, 220-2.

PMID:
15335212
13.

primers4clades: a web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies.

Contreras-Moreira B, Sachman-Ruiz B, Figueroa-Palacios I, Vinuesa P.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W95-W100. doi: 10.1093/nar/gkp377. Epub 2009 May 21.

14.

Set of novel tools for PCR primer design.

Gorelenkov V, Antipov A, Lejnine S, Daraselia N, Yuryev A.

Biotechniques. 2001 Dec;31(6):1326-30.

PMID:
11768662
15.

Primer3Plus, an enhanced web interface to Primer3.

Untergasser A, Nijveen H, Rao X, Bisseling T, Geurts R, Leunissen JA.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W71-4. Epub 2007 May 7.

16.

FastPCR software for PCR, in silico PCR, and oligonucleotide assembly and analysis.

Kalendar R, Lee D, Schulman AH.

Methods Mol Biol. 2014;1116:271-302. doi: 10.1007/978-1-62703-764-8_18.

PMID:
24395370
17.

AcePrimer: automation of PCR primer design based on gene structure.

McKay SJ, Jones SJ.

Bioinformatics. 2002 Nov;18(11):1538-9.

PMID:
12424127
18.

PUNS: transcriptomic- and genomic-in silico PCR for enhanced primer design.

Boutros PC, Okey AB.

Bioinformatics. 2004 Oct 12;20(15):2399-400. Epub 2004 Apr 8.

PMID:
15073008
19.

PrecisePrimer: an easy-to-use web server for designing PCR primers for DNA library cloning and DNA shuffling.

Pauthenier C, Faulon JL.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W205-9. doi: 10.1093/nar/gku393. Epub 2014 May 14.

20.

Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR.

Suzuki MT, Giovannoni SJ.

Appl Environ Microbiol. 1996 Feb;62(2):625-30.

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