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Items: 1 to 20 of 137

1.

The curious chemical biology of cytosine: deamination, methylation, and oxidation as modulators of genomic potential.

Nabel CS, Manning SA, Kohli RM.

ACS Chem Biol. 2012 Jan 20;7(1):20-30. doi: 10.1021/cb2002895. Epub 2011 Oct 31. Review.

2.

AID/APOBEC deaminases disfavor modified cytosines implicated in DNA demethylation.

Nabel CS, Jia H, Ye Y, Shen L, Goldschmidt HL, Stivers JT, Zhang Y, Kohli RM.

Nat Chem Biol. 2012 Sep;8(9):751-8. doi: 10.1038/nchembio.1042. Epub 2012 Jul 8.

3.

Epigenetic modifications in DNA could mimic oxidative DNA damage: A double-edged sword.

Ito S, Kuraoka I.

DNA Repair (Amst). 2015 Aug;32:52-7. doi: 10.1016/j.dnarep.2015.04.013. Epub 2015 May 1. Review.

PMID:
25956859
4.

[Oxidation and deamination of nucleobases as an epigenetic tool].

Guz J, Jurgowiak M, Oliński R.

Postepy Hig Med Dosw (Online). 2012 May 24;66:275-86. Review. Polish.

5.

TET enzymatic oxidation of 5-methylcytosine, 5-hydroxymethylcytosine and 5-formylcytosine.

Cadet J, Wagner JR.

Mutat Res Genet Toxicol Environ Mutagen. 2014 Apr;764-765:18-35. doi: 10.1016/j.mrgentox.2013.09.001. Epub 2013 Sep 14. Review.

PMID:
24045206
6.

Expanding the epigenetic landscape: novel modifications of cytosine in genomic DNA.

Kriaucionis S, Tahiliani M.

Cold Spring Harb Perspect Biol. 2014 Oct 1;6(10):a018630. doi: 10.1101/cshperspect.a018630. Review.

7.

TET enzymes, TDG and the dynamics of DNA demethylation.

Kohli RM, Zhang Y.

Nature. 2013 Oct 24;502(7472):472-9. doi: 10.1038/nature12750. Review.

8.

Deamination, oxidation, and C-C bond cleavage reactivity of 5-hydroxymethylcytosine, 5-formylcytosine, and 5-carboxycytosine.

Schiesser S, Pfaffeneder T, Sadeghian K, Hackner B, Steigenberger B, Schröder AS, Steinbacher J, Kashiwazaki G, Höfner G, Wanner KT, Ochsenfeld C, Carell T.

J Am Chem Soc. 2013 Oct 2;135(39):14593-9. doi: 10.1021/ja403229y. Epub 2013 Sep 17.

PMID:
23980549
9.

Single base resolution analysis of 5-methylcytosine and 5-hydroxymethylcytosine by RRBS and TAB-RRBS.

Hahn MA, Li AX, Wu X, Pfeifer GP.

Methods Mol Biol. 2015;1238:273-87. doi: 10.1007/978-1-4939-1804-1_14.

10.

Dehydration, deamination and enzymatic repair of cytosine glycols from oxidized poly(dG-dC) and poly(dI-dC).

Tremblay S, Wagner JR.

Nucleic Acids Res. 2008 Jan;36(1):284-93. Epub 2007 Nov 21.

11.

Deamination features of 5-hydroxymethylcytosine, a radical and enzymatic DNA oxidation product.

Grand A, Jorge N, Morell C, Cadet J, Eriksson LA.

J Mol Model. 2014 Jun;20(6):2290. doi: 10.1007/s00894-014-2290-9. Epub 2014 May 27.

PMID:
24863534
12.

Photochemical deamination and demethylation of 5-methylcytosine.

Privat E, Sowers LC.

Chem Res Toxicol. 1996 Jun;9(4):745-50.

PMID:
8831819
13.

TET enzymes and DNA hydroxymethylation in neural development and function - how critical are they?

Santiago M, Antunes C, Guedes M, Sousa N, Marques CJ.

Genomics. 2014 Nov;104(5):334-40. doi: 10.1016/j.ygeno.2014.08.018. Epub 2014 Sep 6. Review.

14.

Genomic distribution and possible functions of DNA hydroxymethylation in the brain.

Wen L, Tang F.

Genomics. 2014 Nov;104(5):341-6. doi: 10.1016/j.ygeno.2014.08.020. Epub 2014 Sep 7. Review.

15.

The expanding scope and impact of epigenetic cytosine modifications.

Liu MY, DeNizio JE, Schutsky EK, Kohli RM.

Curr Opin Chem Biol. 2016 Aug;33:67-73. doi: 10.1016/j.cbpa.2016.05.029. Epub 2016 Jun 14. Review.

PMID:
27315338
16.

Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation.

Wu H, Zhang Y.

Genes Dev. 2011 Dec 1;25(23):2436-52. doi: 10.1101/gad.179184.111. Review.

17.

Spontaneous deamination of cytosine and 5-methylcytosine residues in DNA and replacement of 5-methylcytosine residues with cytosine residues.

Ehrlich M, Zhang XY, Inamdar NM.

Mutat Res. 1990 May;238(3):277-86. Review. No abstract available.

PMID:
2188124
19.

Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites.

Maiti A, Drohat AC.

J Biol Chem. 2011 Oct 14;286(41):35334-8. doi: 10.1074/jbc.C111.284620. Epub 2011 Aug 23.

20.

Functions of TET Proteins in Hematopoietic Transformation.

Han JA, An J, Ko M.

Mol Cells. 2015 Nov;38(11):925-35. doi: 10.14348/molcells.2015.0294. Epub 2015 Nov 10. Review.

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