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Items: 1 to 20 of 269

1.

MyBioNet: interactively visualize, edit and merge biological networks on the web.

Huang D, Huang Y, Bai Y, Chen D, Hofestädt R, Klukas C, Chen M.

Bioinformatics. 2011 Dec 1;27(23):3321-2. doi: 10.1093/bioinformatics/btr557.

PMID:
21984760
2.

MetaPath Online: a web server implementation of the network expansion algorithm.

Handorf T, Ebenhöh O.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W613-8.

3.

An active registry for bioinformatics web services.

Pettifer S, Thorne D, McDermott P, Attwood T, Baran J, Bryne JC, Hupponen T, Mowbray D, Vriend G.

Bioinformatics. 2009 Aug 15;25(16):2090-1. doi: 10.1093/bioinformatics/btp329.

4.

MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization.

Blum T, Kohlbacher O.

Bioinformatics. 2008 Sep 15;24(18):2108-9. doi: 10.1093/bioinformatics/btn360.

5.

ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.

Pitkänen E, Akerlund A, Rantanen A, Jouhten P, Ukkonen E.

J Integr Bioinform. 2008 Aug 25;5(2). doi: 10.2390/biecoll-jib-2008-102.

PMID:
20134058
6.

PathCase: pathways database system.

Elliott B, Kirac M, Cakmak A, Yavas G, Mayes S, Cheng E, Wang Y, Gupta C, Ozsoyoglu G, Meral Ozsoyoglu Z.

Bioinformatics. 2008 Nov 1;24(21):2526-33. doi: 10.1093/bioinformatics/btn459.

PMID:
18728044
7.

KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database.

Moutselos K, Kanaris I, Chatziioannou A, Maglogiannis I, Kolisis FN.

BMC Bioinformatics. 2009 Oct 8;10:324. doi: 10.1186/1471-2105-10-324.

8.

MetNetAligner: a web service tool for metabolic network alignments.

Cheng Q, Harrison R, Zelikovsky A.

Bioinformatics. 2009 Aug 1;25(15):1989-90. doi: 10.1093/bioinformatics/btp287.

PMID:
19414533
9.

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.

10.

The Bioverse API and web application.

Guerquin M, McDermott J, Frazier Z, Samudrala R.

Methods Mol Biol. 2009;541:511-34. doi: 10.1007/978-1-59745-243-4_22. Review.

PMID:
19381533
11.

KEGG-based pathway visualization tool for complex omics data.

Arakawa K, Kono N, Yamada Y, Mori H, Tomita M.

In Silico Biol. 2005;5(4):419-23.

PMID:
16268787
12.

BEReX: Biomedical Entity-Relationship eXplorer.

Jeon M, Lee S, Lee K, Tan AC, Kang J.

Bioinformatics. 2014 Jan 1;30(1):135-6. doi: 10.1093/bioinformatics/btt598.

PMID:
24149052
13.

WebGBrowse--a web server for GBrowse.

Podicheti R, Gollapudi R, Dong Q.

Bioinformatics. 2009 Jun 15;25(12):1550-1. doi: 10.1093/bioinformatics/btp239.

PMID:
19357095
14.

WEbcoli: an interactive and asynchronous web application for in silico design and analysis of genome-scale E.coli model.

Jung TS, Yeo HC, Reddy SG, Cho WS, Lee DY.

Bioinformatics. 2009 Nov 1;25(21):2850-2. doi: 10.1093/bioinformatics/btp496.

PMID:
19689960
15.

BOV--a web-based BLAST output visualization tool.

Gollapudi R, Revanna KV, Hemmerich C, Schaack S, Dong Q.

BMC Genomics. 2008 Sep 15;9:414. doi: 10.1186/1471-2164-9-414.

16.
17.

Web-based metabolic network visualization with a zooming user interface.

Latendresse M, Karp PD.

BMC Bioinformatics. 2011 May 19;12:176. doi: 10.1186/1471-2105-12-176.

18.

BIAS: Bioinformatics Integrated Application Software.

Finak G, Godin N, Hallett M, Pepin F, Rajabi Z, Srivastava V, Tang Z.

Bioinformatics. 2005 Apr 15;21(8):1745-6.

PMID:
15572471
19.

FMM: a web server for metabolic pathway reconstruction and comparative analysis.

Chou CH, Chang WC, Chiu CM, Huang CC, Huang HD.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W129-34. doi: 10.1093/nar/gkp264.

20.

MRSD: a web server for metabolic route search and design.

Xia D, Zheng H, Liu Z, Li G, Li J, Hong J, Zhao K.

Bioinformatics. 2011 Jun 1;27(11):1581-2. doi: 10.1093/bioinformatics/btr160.

PMID:
21450713

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