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Items: 1 to 20 of 103

1.

Origins of stochastic intracellular processes and consequences for cell-to-cell variability and cellular survival strategies.

Schwabe A, Dobrzyński M, Rybakova K, Verschure P, Bruggeman FJ.

Methods Enzymol. 2011;500:597-625. doi: 10.1016/B978-0-12-385118-5.00028-1.

PMID:
21943916
2.

Signatures of gene expression noise in cellular systems.

Rausenberger J, Fleck C, Timmer J, Kollmann M.

Prog Biophys Mol Biol. 2009 Sep-Oct;100(1-3):57-66. doi: 10.1016/j.pbiomolbio.2009.06.003. Epub 2009 Jun 11.

PMID:
19523977
3.

Stochastic switching in gene networks can occur by a single-molecule event or many molecular steps.

Choi PJ, Xie XS, Shakhnovich EI.

J Mol Biol. 2010 Feb 12;396(1):230-44. doi: 10.1016/j.jmb.2009.11.035. Epub 2009 Nov 18.

PMID:
19931280
4.

Stochastic gene expression in a single cell.

Elowitz MB, Levine AJ, Siggia ED, Swain PS.

Science. 2002 Aug 16;297(5584):1183-6.

5.

Stochastic modeling of cellular networks.

Stewart-Ornstein J, El-Samad H.

Methods Cell Biol. 2012;110:111-37. doi: 10.1016/B978-0-12-388403-9.00005-9.

PMID:
22482947
6.

Listening to the noise: random fluctuations reveal gene network parameters.

Munsky B, Trinh B, Khammash M.

Mol Syst Biol. 2009;5:318. doi: 10.1038/msb.2009.75. Epub 2009 Oct 13.

7.

Negative feedback through mRNA provides the best control of gene-expression noise.

Singh A.

IEEE Trans Nanobioscience. 2011 Sep;10(3):194-200. doi: 10.1109/TNB.2011.2168826.

PMID:
22020106
8.

Modeling and simulation of biological systems with stochasticity.

Meng TC, Somani S, Dhar P.

In Silico Biol. 2004;4(3):293-309.

PMID:
15724281
9.

Intrinsic and extrinsic contributions to stochasticity in gene expression.

Swain PS, Elowitz MB, Siggia ED.

Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12795-800. Epub 2002 Sep 17.

10.

Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population.

Labhsetwar P, Cole JA, Roberts E, Price ND, Luthey-Schulten ZA.

Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):14006-11. doi: 10.1073/pnas.1222569110. Epub 2013 Aug 1.

11.

Stochastic and delayed stochastic models of gene expression and regulation.

Ribeiro AS.

Math Biosci. 2010 Jan;223(1):1-11. doi: 10.1016/j.mbs.2009.10.007. Epub 2009 Oct 31. Review.

PMID:
19883665
12.

Environmental conditions and transcriptional regulation in Escherichia coli: a physiological integrative approach.

Martínez-Antonio A, Salgado H, Gama-Castro S, Gutiérrez-Ríos RM, Jiménez-Jacinto V, Collado-Vides J.

Biotechnol Bioeng. 2003 Dec 30;84(7):743-9.

PMID:
14708114
13.

Studying genetic regulatory networks at the molecular level: delayed reaction stochastic models.

Zhu R, Ribeiro AS, Salahub D, Kauffman SA.

J Theor Biol. 2007 Jun 21;246(4):725-45. Epub 2007 Feb 6.

PMID:
17350653
14.

Selection to minimise noise in living systems and its implications for the evolution of gene expression.

Lehner B.

Mol Syst Biol. 2008;4:170. doi: 10.1038/msb.2008.11. Epub 2008 Mar 4.

15.

Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes.

Fong SS, Nanchen A, Palsson BO, Sauer U.

J Biol Chem. 2006 Mar 24;281(12):8024-33. Epub 2005 Nov 30.

16.

Regulation of noise in the expression of a single gene.

Ozbudak EM, Thattai M, Kurtser I, Grossman AD, van Oudenaarden A.

Nat Genet. 2002 May;31(1):69-73. Epub 2002 Apr 22.

PMID:
11967532
17.

Relevance of phenotypic noise to adaptation and evolution.

Kaneko K, Furusawa C.

IET Syst Biol. 2008 Sep;2(5):234-46. doi: 10.1049/iet-syb:20070078.

PMID:
19045819
18.

Design principles of a bacterial signalling network.

Kollmann M, Løvdok L, Bartholomé K, Timmer J, Sourjik V.

Nature. 2005 Nov 24;438(7067):504-7.

PMID:
16306993
19.

Gene network shaping of inherent noise spectra.

Austin DW, Allen MS, McCollum JM, Dar RD, Wilgus JR, Sayler GS, Samatova NF, Cox CD, Simpson ML.

Nature. 2006 Feb 2;439(7076):608-11.

PMID:
16452980
20.

Noise in biological circuits.

Simpson ML, Cox CD, Allen MS, McCollum JM, Dar RD, Karig DK, Cooke JF.

Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2009 Mar-Apr;1(2):214-25. doi: 10.1002/wnan.22. Review.

PMID:
20049792

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