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Items: 1 to 20 of 119

1.

MetSign: a computational platform for high-resolution mass spectrometry-based metabolomics.

Wei X, Sun W, Shi X, Koo I, Wang B, Zhang J, Yin X, Tang Y, Bogdanov B, Kim S, Zhou Z, McClain C, Zhang X.

Anal Chem. 2011 Oct 15;83(20):7668-75. doi: 10.1021/ac2017025.

2.

MetPP: a computational platform for comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry-based metabolomics.

Wei X, Shi X, Koo I, Kim S, Schmidt RH, Arteel GE, Watson WH, McClain C, Zhang X.

Bioinformatics. 2013 Jul 15;29(14):1786-92. doi: 10.1093/bioinformatics/btt275.

3.

Translational Metabolomics of Head Injury: Exploring Dysfunctional Cerebral Metabolism with Ex Vivo NMR Spectroscopy-Based Metabolite Quantification.

Wolahan SM, Hirt D, Glenn TC.

In: Kobeissy FH, editor. Brain Neurotrauma: Molecular, Neuropsychological, and Rehabilitation Aspects. Boca Raton (FL): CRC Press/Taylor & Francis; 2015. Chapter 25.

4.

Metabolomics data analysis, visualization, and integration.

Sumner LW, Urbanczyk-Wochniak E, Broeckling CD.

Methods Mol Biol. 2007;406:409-36.

PMID:
18287705
6.

MRMPROBS suite for metabolomics using large-scale MRM assays.

Tsugawa H, Kanazawa M, Ogiwara A, Arita M.

Bioinformatics. 2014 Aug 15;30(16):2379-80. doi: 10.1093/bioinformatics/btu203.

PMID:
24753485
7.

MetTailor: dynamic block summary and intensity normalization for robust analysis of mass spectrometry data in metabolomics.

Chen G, Cui L, Teo GS, Ong CN, Tan CS, Choi H.

Bioinformatics. 2015 Nov 15;31(22):3645-52. doi: 10.1093/bioinformatics/btv434.

PMID:
26220962
8.

MET-XAlign: a metabolite cross-alignment tool for LC/MS-based comparative metabolomics.

Zhang W, Lei Z, Huhman D, Sumner LW, Zhao PX.

Anal Chem. 2015 Sep 15;87(18):9114-9. doi: 10.1021/acs.analchem.5b01324.

9.

MeltDB: a software platform for the analysis and integration of metabolomics experiment data.

Neuweger H, Albaum SP, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A.

Bioinformatics. 2008 Dec 1;24(23):2726-32. doi: 10.1093/bioinformatics/btn452.

PMID:
18765459
10.

IPO: a tool for automated optimization of XCMS parameters.

Libiseller G, Dvorzak M, Kleb U, Gander E, Eisenberg T, Madeo F, Neumann S, Trausinger G, Sinner F, Pieber T, Magnes C.

BMC Bioinformatics. 2015 Apr 16;16:118. doi: 10.1186/s12859-015-0562-8.

11.
12.

Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction.

Dhanasekaran AR, Pearson JL, Ganesan B, Weimer BC.

BMC Bioinformatics. 2015 Feb 25;16:62. doi: 10.1186/s12859-015-0462-y.

13.

Identifying and quantifying metabolites by scoring peaks of GC-MS data.

Aggio RB, Mayor A, Reade S, Probert CS, Ruggiero K.

BMC Bioinformatics. 2014 Dec 10;15:374. doi: 10.1186/s12859-014-0374-2.

14.

Web-based resources for mass-spectrometry-based metabolomics: a user's guide.

Tohge T, Fernie AR.

Phytochemistry. 2009 Mar;70(4):450-6. doi: 10.1016/j.phytochem.2009.02.004. Review.

PMID:
19285697
15.

Haystack, a web-based tool for metabolomics research.

Grace SC, Embry S, Luo H.

BMC Bioinformatics. 2014;15 Suppl 11:S12. doi: 10.1186/1471-2105-15-S11-S12.

16.

CoreFlow: a computational platform for integration, analysis and modeling of complex biological data.

Pasculescu A, Schoof EM, Creixell P, Zheng Y, Olhovsky M, Tian R, So J, Vanderlaan RD, Pawson T, Linding R, Colwill K.

J Proteomics. 2014 Apr 4;100:167-73. doi: 10.1016/j.jprot.2014.01.023.

PMID:
24503186
17.

MET-COFEA: a liquid chromatography/mass spectrometry data processing platform for metabolite compound feature extraction and annotation.

Zhang W, Chang J, Lei Z, Huhman D, Sumner LW, Zhao PX.

Anal Chem. 2014 Jul 1;86(13):6245-53. doi: 10.1021/ac501162k.

18.

IsoMS: automated processing of LC-MS data generated by a chemical isotope labeling metabolomics platform.

Zhou R, Tseng CL, Huan T, Li L.

Anal Chem. 2014 May 20;86(10):4675-9. doi: 10.1021/ac5009089.

PMID:
24766305
19.

MetDAT: a modular and workflow-based free online pipeline for mass spectrometry data processing, analysis and interpretation.

Biswas A, Mynampati KC, Umashankar S, Reuben S, Parab G, Rao R, Kannan VS, Swarup S.

Bioinformatics. 2010 Oct 15;26(20):2639-40. doi: 10.1093/bioinformatics/btq436.

PMID:
20702401
20.

Multiple reaction monitoring-ion pair finder: a systematic approach to transform nontargeted mode to pseudotargeted mode for metabolomics study based on liquid chromatography-mass spectrometry.

Luo P, Dai W, Yin P, Zeng Z, Kong H, Zhou L, Wang X, Chen S, Lu X, Xu G.

Anal Chem. 2015;87(10):5050-5. doi: 10.1021/acs.analchem.5b00615.

PMID:
25884293

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