Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 88

1.

Construction of random perfect phylogeny matrix.

Sadeghi M, Pezeshk H, Eslahchi C, Ahmadian S, Abadi SM.

Adv Appl Bioinform Chem. 2010;3:89-96. doi: 10.2147/AABC.S13397. Epub 2010 Nov 16.

2.

Haplotyping as perfect phylogeny: a direct approach.

Bafna V, Gusfield D, Lancia G, Yooseph S.

J Comput Biol. 2003;10(3-4):323-40.

PMID:
12935331
3.

An optimal algorithm for perfect phylogeny haplotyping.

Vijayasatya R, Mukherjee A.

J Comput Biol. 2006 May;13(4):897-928.

PMID:
16761918
4.

Computational problems in perfect phylogeny haplotyping: typing without calling the allele.

Barzuza T, Beckmann JS, Shamir R, Pe'er I.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Jan-Mar;5(1):101-9. doi: 10.1109/TCBB.2007.1063.

PMID:
18245879
5.

Constructing near-perfect phylogenies with multiple homoplasy events.

Satya RV, Mukherjee A, Alexe G, Parida L, Bhanot G.

Bioinformatics. 2006 Jul 15;22(14):e514-22.

PMID:
16873515
6.

Whole genome association mapping by incompatibilities and local perfect phylogenies.

Mailund T, Besenbacher S, Schierup MH.

BMC Bioinformatics. 2006 Oct 16;7:454.

7.

SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects.

Dereeper A, Nicolas S, Le Cunff L, Bacilieri R, Doligez A, Peros JP, Ruiz M, This P.

BMC Bioinformatics. 2011 May 5;12:134. doi: 10.1186/1471-2105-12-134.

8.

A double classification tree search algorithm for index SNP selection.

Zhang P, Sheng H, Uehara R.

BMC Bioinformatics. 2004 Jul 6;5:89.

9.
10.

An efficient algorithm for Perfect Phylogeny Haplotyping.

Vijayasatya R, Mukherjee A.

Proc IEEE Comput Syst Bioinform Conf. 2005:103-10.

PMID:
16447968
11.

Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer.

Okumura K, Kato M, Kirikae T, Kayano M, Miyoshi-Akiyama T.

BMC Genomics. 2015 Mar 20;16:218. doi: 10.1186/s12864-015-1368-9.

12.

Efficient reconstruction of haplotype structure via perfect phylogeny.

Eskin E, Halperin E, Karp RM.

J Bioinform Comput Biol. 2003 Apr;1(1):1-20.

PMID:
15290779
13.

RadixHap: a radix tree-based heuristic for solving the single individual haplotyping problem.

Wang TC, Taheri J, Zomaya AY.

Int J Bioinform Res Appl. 2015;11(1):10-29. doi: 10.1504/IJBRA.2015.067336.

PMID:
25667383
14.

HMEC: A Heuristic Algorithm for Individual Haplotyping with Minimum Error Correction.

Bayzid MS, Alam MM, Mueen A, Rahman MS.

ISRN Bioinform. 2013 Jan 28;2013:291741. doi: 10.1155/2013/291741. eCollection 2013.

15.

SNP-VISTA: an interactive SNP visualization tool.

Shah N, Teplitsky MV, Minovitsky S, Pennacchio LA, Hugenholtz P, Hamann B, Dubchak IL.

BMC Bioinformatics. 2005 Dec 8;6:292.

16.
17.

Shorelines of islands of tractability: algorithms for parsimony and minimum perfect phylogeny haplotyping problems.

van Iersel L, Keijsper J, Kelk S, Stougie L.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun;5(2):301-12. doi: 10.1109/TCBB.2007.70232.

PMID:
18451439
18.

HaploSNPer: a web-based allele and SNP detection tool.

Tang J, Leunissen JA, Voorrips RE, van der Linden CG, Vosman B.

BMC Genet. 2008 Feb 28;9:23. doi: 10.1186/1471-2156-9-23.

19.

A note on efficient computation of haplotypes via perfect phylogeny.

Bafna V, Gusfield D, Hannenhalli S, Yooseph S.

J Comput Biol. 2004;11(5):858-66.

PMID:
15700406
20.

AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications.

Van Geystelen A, Decorte R, Larmuseau MH.

BMC Genomics. 2013 Feb 13;14:101. doi: 10.1186/1471-2164-14-101.

Supplemental Content

Support Center