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Items: 1 to 20 of 174

1.

Identifying bacterial and archaeal homologs of pentameric ligand-gated ion channel (pLGIC) family using domain-based and alignment-based approaches.

Rendon G, Kantorovitz MR, Tilson JL, Jakobsson E.

Channels (Austin). 2011 Jul-Aug;5(4):325-43. doi: 10.4161/chan.5.4.16822.

PMID:
21918370
3.

Diversity and evolution of the small multidrug resistance protein family.

Bay DC, Turner RJ.

BMC Evol Biol. 2009 Jun 23;9:140. doi: 10.1186/1471-2148-9-140.

4.

Towards a reliable objective function for multiple sequence alignments.

Thompson JD, Plewniak F, Ripp R, Thierry JC, Poch O.

J Mol Biol. 2001 Dec 7;314(4):937-51.

PMID:
11734009
5.

Mechanosensitive channels of bacteria and archaea share a common ancestral origin.

Kloda A, Martinac B.

Eur Biophys J. 2002 Mar;31(1):14-25.

PMID:
12046893
6.
7.

DNA-binding proteins and evolution of transcription regulation in the archaea.

Aravind L, Koonin EV.

Nucleic Acids Res. 1999 Dec 1;27(23):4658-70.

8.

Sequence similarity analysis of Escherichia coli proteins: functional and evolutionary implications.

Koonin EV, Tatusov RL, Rudd KE.

Proc Natl Acad Sci U S A. 1995 Dec 5;92(25):11921-5.

9.

Genome-wide detection and family clustering of ion channels.

Harte R, Ouzounis CA.

FEBS Lett. 2002 Mar 13;514(2-3):129-34.

10.

The origins of modern proteomes.

Kurland CG, Canbäck B, Berg OG.

Biochimie. 2007 Dec;89(12):1454-63. Epub 2007 Sep 15.

PMID:
17949885
11.

ProClust: improved clustering of protein sequences with an extended graph-based approach.

Pipenbacher P, Schliep A, Schneckener S, Schönhuth A, Schomburg D, Schrader R.

Bioinformatics. 2002;18 Suppl 2:S182-91.

PMID:
12386002
12.

Archaeal DNA replication: identifying the pieces to solve a puzzle.

Cann IK, Ishino Y.

Genetics. 1999 Aug;152(4):1249-67. Review.

13.
14.

Conserved motifs in mechanosensitive channels MscL and MscS.

Balleza D, Gómez-Lagunas F.

Eur Biophys J. 2009 Sep;38(7):1013-27. doi: 10.1007/s00249-009-0460-y. Epub 2009 May 8.

PMID:
19424690
16.

Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV.

Genome Res. 1999 Jul;9(7):608-28.

18.

The bestrophin family of anion channels: identification of prokaryotic homologues.

Hagen AR, Barabote RD, Saier MH.

Mol Membr Biol. 2005 Jul-Aug;22(4):291-302.

PMID:
16154901
19.

Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease.

Arcus VL, Bäckbro K, Roos A, Daniel EL, Baker EN.

J Biol Chem. 2004 Apr 16;279(16):16471-8. Epub 2004 Jan 20.

20.

A phylogenomic profile of hemerythrins, the nonheme diiron binding respiratory proteins.

Bailly X, Vanin S, Chabasse C, Mizuguchi K, Vinogradov SN.

BMC Evol Biol. 2008 Sep 2;8:244. doi: 10.1186/1471-2148-8-244.

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