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Items: 1 to 20 of 132

1.

Methylated-CpG Island Recovery Assay.

Mitchell N, Deangelis JT, Tollefsbol TO.

Methods Mol Biol. 2011;791:125-33. doi: 10.1007/978-1-61779-316-5_10.

2.

DNA methylation profiling using the methylated-CpG island recovery assay (MIRA).

Rauch TA, Pfeifer GP.

Methods. 2010 Nov;52(3):213-7. doi: 10.1016/j.ymeth.2010.03.004. Epub 2010 Mar 19. Review.

3.

MIRA-seq for DNA methylation analysis of CpG islands.

Jung M, Kadam S, Xiong W, Rauch TA, Jin SG, Pfeifer GP.

Epigenomics. 2015 Aug;7(5):695-706. doi: 10.2217/epi.15.33. Epub 2015 Apr 17.

5.

The MIRA method for DNA methylation analysis.

Rauch TA, Pfeifer GP.

Methods Mol Biol. 2009;507:65-75. doi: 10.1007/978-1-59745-522-0_6.

6.

Deoxyribonucleic acid methylation profiling of single human blastocysts by methylated CpG-island amplification coupled with CpG-island microarray.

Huntriss J, Hemmings K, Baskaran P, Hazelwood L, Elder K, Virtanen C, Miller D, Picton HM.

Fertil Steril. 2015 Jun;103(6):1566-71.e1-4. doi: 10.1016/j.fertnstert.2015.03.020. Epub 2015 Apr 22.

7.

Monitoring methylation changes in cancer.

Beier V, Mund C, Hoheisel JD.

Adv Biochem Eng Biotechnol. 2007;104:1-11. Review.

PMID:
17290816
8.

Analyzing the cancer methylome through targeted bisulfite sequencing.

Lee EJ, Luo J, Wilson JM, Shi H.

Cancer Lett. 2013 Nov 1;340(2):171-8. doi: 10.1016/j.canlet.2012.10.040. Epub 2012 Nov 28. Review.

9.

DNA methylation patterns in lung carcinomas.

Pfeifer GP, Rauch TA.

Semin Cancer Biol. 2009 Jun;19(3):181-7. doi: 10.1016/j.semcancer.2009.02.008. Epub 2009 Feb 20. Review.

10.

BZLF1 governs CpG-methylated chromatin of Epstein-Barr Virus reversing epigenetic repression.

Woellmer A, Arteaga-Salas JM, Hammerschmidt W.

PLoS Pathog. 2012 Sep;8(9):e1002902. doi: 10.1371/journal.ppat.1002902. Epub 2012 Sep 6.

11.

MIRA-SNuPE, a quantitative, multiplex method for measuring allele-specific DNA methylation.

Lee DH, Tran DA, Singh P, Oates N, Rivas GE, Larson GP, Pfeifer GP, Szabó PE.

Epigenetics. 2011 Feb;6(2):212-23. Epub 2011 Feb 1.

12.

Genome-wide DNA methylation analysis in precursor B-cells.

Almamun M, Levinson BT, Gater ST, Schnabel RD, Arthur GL, Davis JW, Taylor KH.

Epigenetics. 2014 Dec;9(12):1588-95. doi: 10.4161/15592294.2014.983379.

13.

Homeobox gene methylation in lung cancer studied by genome-wide analysis with a microarray-based methylated CpG island recovery assay.

Rauch T, Wang Z, Zhang X, Zhong X, Wu X, Lau SK, Kernstine KH, Riggs AD, Pfeifer GP.

Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5527-32. Epub 2007 Mar 16.

14.

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF.

Nat Biotechnol. 2010 Oct;28(10):1097-105. doi: 10.1038/nbt.1682. Epub 2010 Sep 19.

15.

Methodological aspects of whole-genome bisulfite sequencing analysis.

Adusumalli S, Mohd Omar MF, Soong R, Benoukraf T.

Brief Bioinform. 2015 May;16(3):369-79. doi: 10.1093/bib/bbu016. Epub 2014 May 27. Review.

PMID:
24867940
16.

DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter.

Han H, Cortez CC, Yang X, Nichols PW, Jones PA, Liang G.

Hum Mol Genet. 2011 Nov 15;20(22):4299-310. doi: 10.1093/hmg/ddr356. Epub 2011 Aug 11.

17.

Comparison of genome-wide and gene-specific DNA methylation between ART and naturally conceived pregnancies.

Melamed N, Choufani S, Wilkins-Haug LE, Koren G, Weksberg R.

Epigenetics. 2015;10(6):474-83. doi: 10.4161/15592294.2014.988041. Epub 2015 Jan 12.

18.
19.

Predicting aberrant CpG island methylation.

Feltus FA, Lee EK, Costello JF, Plass C, Vertino PM.

Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12253-8. Epub 2003 Sep 30.

20.

High density DNA methylation array with single CpG site resolution.

Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan JB, Shen R.

Genomics. 2011 Oct;98(4):288-95. doi: 10.1016/j.ygeno.2011.07.007. Epub 2011 Aug 2.

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