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Items: 1 to 20 of 85

1.

Consistency of sequence-based gene clusters.

Wittler R, Maňuch J, Patterson M, Stoye J.

J Comput Biol. 2011 Sep;18(9):1023-39. doi: 10.1089/cmb.2011.0083.

PMID:
21899413
2.

A unified approach for reconstructing ancient gene clusters.

Stoye J, Wittler R.

IEEE/ACM Trans Comput Biol Bioinform. 2009 Jul-Sep;6(3):387-400. doi: 10.1109/TCBB.2008.135.

PMID:
19644167
3.

Efficient computation of approximate gene clusters based on reference occurrences.

Jahn K.

J Comput Biol. 2011 Sep;18(9):1255-74. doi: 10.1089/cmb.2011.0132.

PMID:
21899430
4.

Reconstructing histories of complex gene clusters on a phylogeny.

Vinar T, Brejová B, Song G, Siepel A.

J Comput Biol. 2010 Sep;17(9):1267-79. doi: 10.1089/cmb.2010.0090.

PMID:
20874408
5.

A hybrid gene team model and its application to genome analysis.

Kim S, Choi JH, Saple A, Yang J.

J Bioinform Comput Biol. 2006 Apr;4(2):171-96.

PMID:
16819779
6.

Computing the reversal distance between genomes in the presence of multi-gene families via binary integer programming.

Suksawatchon J, Lursinsap C, Bodén M.

J Bioinform Comput Biol. 2007 Feb;5(1):117-33.

PMID:
17477494
7.
8.

Computation of median gene clusters.

Böcker S, Jahn K, Mixtacki J, Stoye J.

J Comput Biol. 2009 Aug;16(8):1085-99. doi: 10.1089/cmb.2009.0098.

PMID:
19689215
9.

GeneTRACE-reconstruction of gene content of ancestral species.

Kunin V, Ouzounis CA.

Bioinformatics. 2003 Jul 22;19(11):1412-6.

PMID:
12874054
10.

Gene finding with a hidden Markov model of genome structure and evolution.

Pedersen JS, Hein J.

Bioinformatics. 2003 Jan 22;19(2):219-27.

PMID:
12538242
11.

Modelling the evolution of multi-gene families.

Nye TM.

Stat Methods Med Res. 2009 Oct;18(5):487-504. doi: 10.1177/0962280208099450. Epub 2009 Jan 19.

PMID:
19153166
12.

Identifying clusters of functionally related genes in genomes.

Yi G, Sze SH, Thon MR.

Bioinformatics. 2007 May 1;23(9):1053-60. Epub 2007 Jan 19.

PMID:
17237058
13.

Use of long sequence alignments to study the evolution and regulation of mammalian globin gene clusters.

Hardison R, Miller W.

Mol Biol Evol. 1993 Jan;10(1):73-102. Review.

PMID:
8383794
14.

Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes.

Rogozin IB, Makarova KS, Wolf YI, Koonin EV.

Brief Bioinform. 2004 Jun;5(2):131-49.

PMID:
15260894
15.

Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping.

Fujibuchi W, Ogata H, Matsuda H, Kanehisa M.

Nucleic Acids Res. 2000 Oct 15;28(20):4029-36.

16.

Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases.

Xu W, Alain B, Sankoff D.

Bioinformatics. 2008 Aug 15;24(16):i146-52. doi: 10.1093/bioinformatics/btn295.

PMID:
18689817
18.

Fast and accurate phylogenetic reconstruction from high-resolution whole-genome data and a novel robustness estimator.

Lin Y, Rajan V, Moret BM.

J Comput Biol. 2011 Sep;18(9):1131-9. doi: 10.1089/cmb.2011.0114.

PMID:
21899420
19.

A 2-approximation for the minimum duplication speciation problem.

Ouangraoua A, Swenson KM, Chauve C.

J Comput Biol. 2011 Sep;18(9):1041-53. doi: 10.1089/cmb.2011.0108.

PMID:
21899414
20.

Elephant shark sequence reveals unique insights into the evolutionary history of vertebrate genes: A comparative analysis of the protocadherin cluster.

Yu WP, Rajasegaran V, Yew K, Loh WL, Tay BH, Amemiya CT, Brenner S, Venkatesh B.

Proc Natl Acad Sci U S A. 2008 Mar 11;105(10):3819-24. doi: 10.1073/pnas.0800398105. Epub 2008 Mar 4.

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