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Items: 1 to 20 of 108

1.

Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems.

Iyer LM, Zhang D, Rogozin IB, Aravind L.

Nucleic Acids Res. 2011 Dec;39(22):9473-97. doi: 10.1093/nar/gkr691. Epub 2011 Sep 3.

2.

Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics.

Zhang D, de Souza RF, Anantharaman V, Iyer LM, Aravind L.

Biol Direct. 2012 Jun 25;7:18. doi: 10.1186/1745-6150-7-18.

3.

A novel immunity system for bacterial nucleic acid degrading toxins and its recruitment in various eukaryotic and DNA viral systems.

Zhang D, Iyer LM, Aravind L.

Nucleic Acids Res. 2011 Jun;39(11):4532-52. doi: 10.1093/nar/gkr036. Epub 2011 Feb 8.

4.

Identification of novel components of NAD-utilizing metabolic pathways and prediction of their biochemical functions.

de Souza RF, Aravind L.

Mol Biosyst. 2012 Jun;8(6):1661-77. doi: 10.1039/c2mb05487f. Epub 2012 Mar 7.

PMID:
22399070
8.

Evolution of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases.

Conticello SG, Thomas CJ, Petersen-Mahrt SK, Neuberger MS.

Mol Biol Evol. 2005 Feb;22(2):367-77. Epub 2004 Oct 20.

PMID:
15496550
9.

New players in the toxin field: polymorphic toxin systems in bacteria.

Jamet A, Nassif X.

MBio. 2015 May 5;6(3):e00285-15. doi: 10.1128/mBio.00285-15. Review.

10.

Evolution and classification of P-loop kinases and related proteins.

Leipe DD, Koonin EV, Aravind L.

J Mol Biol. 2003 Oct 31;333(4):781-815.

PMID:
14568537
12.

The emergence of catalytic and structural diversity within the beta-clip fold.

Iyer LM, Aravind L.

Proteins. 2004 Jun 1;55(4):977-91.

PMID:
15146494
13.

Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing.

Anantharaman V, Makarova KS, Burroughs AM, Koonin EV, Aravind L.

Biol Direct. 2013 Jun 15;8:15. doi: 10.1186/1745-6150-8-15.

14.

Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids.

Iyer LM, Tahiliani M, Rao A, Aravind L.

Cell Cycle. 2009 Jun 1;8(11):1698-710. Epub 2009 Jun 27.

15.
17.

Sub-families of alpha/beta barrel enzymes: a new adenine deaminase family.

Ribard C, Rochet M, Labedan B, Daignan-Fornier B, Alzari P, Scazzocchio C, Oestreicher N.

J Mol Biol. 2003 Dec 12;334(5):1117-31.

PMID:
14643670
18.

Origin and evolution of peptide-modifying dioxygenases and identification of the wybutosine hydroxylase/hydroperoxidase.

Iyer LM, Abhiman S, de Souza RF, Aravind L.

Nucleic Acids Res. 2010 Sep;38(16):5261-79. doi: 10.1093/nar/gkq265. Epub 2010 Apr 27.

19.

Evolutionary genomics of nucleo-cytoplasmic large DNA viruses.

Iyer LM, Balaji S, Koonin EV, Aravind L.

Virus Res. 2006 Apr;117(1):156-84. Epub 2006 Feb 21. Review.

PMID:
16494962
20.

Functional diversification of the RING finger and other binuclear treble clef domains in prokaryotes and the early evolution of the ubiquitin system.

Burroughs AM, Iyer LM, Aravind L.

Mol Biosyst. 2011 Jul;7(7):2261-77. doi: 10.1039/c1mb05061c. Epub 2011 May 6.

PMID:
21547297

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