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Items: 1 to 20 of 598

1.

Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.

Babu M, Gagarinova A, Emili A.

Methods Mol Biol. 2011;781:99-126. doi: 10.1007/978-1-61779-276-2_7.

PMID:
21877280
2.

Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.

Babu M, Gagarinova A, Greenblatt J, Emili A.

Methods Mol Biol. 2011;765:125-53. doi: 10.1007/978-1-61779-197-0_9.

PMID:
21815091
3.

Mapping bacterial functional networks and pathways in Escherichia Coli using synthetic genetic arrays.

Gagarinova A, Babu M, Greenblatt J, Emili A.

J Vis Exp. 2012 Nov 12;(69). pii: 4056. doi: 10.3791/4056.

4.

eSGA: E. coli synthetic genetic array analysis.

Butland G, Babu M, Díaz-Mejía JJ, Bohdana F, Phanse S, Gold B, Yang W, Li J, Gagarinova AG, Pogoutse O, Mori H, Wanner BL, Lo H, Wasniewski J, Christopolous C, Ali M, Venn P, Safavi-Naini A, Sourour N, Caron S, Choi JY, Laigle L, Nazarians-Armavil A, Deshpande A, Joe S, Datsenko KA, Yamamoto N, Andrews BJ, Boone C, Ding H, Sheikh B, Moreno-Hagelseib G, Greenblatt JF, Emili A.

Nat Methods. 2008 Sep;5(9):789-95. doi: 10.1038/nmeth.1239.

PMID:
18677321
5.

Systems-level approaches for identifying and analyzing genetic interaction networks in Escherichia coli and extensions to other prokaryotes.

Babu M, Musso G, Díaz-Mejía JJ, Butland G, Greenblatt JF, Emili A.

Mol Biosyst. 2009 Dec;5(12):1439-55. doi: 10.1039/B907407d. Epub 2009 Jul 31. Review.

PMID:
19763343
6.

Synthetic genetic array (SGA) analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe.

Baryshnikova A, Costanzo M, Dixon S, Vizeacoumar FJ, Myers CL, Andrews B, Boone C.

Methods Enzymol. 2010;470:145-79. doi: 10.1016/S0076-6879(10)70007-0. Epub 2010 Mar 1.

PMID:
20946810
7.

Synthetic genetic array analysis for global mapping of genetic networks in yeast.

Kuzmin E, Sharifpoor S, Baryshnikova A, Costanzo M, Myers CL, Andrews BJ, Boone C.

Methods Mol Biol. 2014;1205:143-68. doi: 10.1007/978-1-4939-1363-3_10.

PMID:
25213244
8.

Predicting genetic interactions with random walks on biological networks.

Chipman KC, Singh AK.

BMC Bioinformatics. 2009 Jan 12;10:17. doi: 10.1186/1471-2105-10-17.

9.

Genome-wide scoring of positive and negative epistasis through decomposition of quantitative genetic interaction fitness matrices.

Eronen VP, Lindén RO, Lindroos A, Kanerva M, Aittokallio T.

PLoS One. 2010 Jul 15;5(7):e11611. doi: 10.1371/journal.pone.0011611.

10.

Linking functionally related genes by sensitive and quantitative characterization of genetic interaction profiles.

Decourty L, Saveanu C, Zemam K, Hantraye F, Frachon E, Rousselle JC, Fromont-Racine M, Jacquier A.

Proc Natl Acad Sci U S A. 2008 Apr 15;105(15):5821-6. doi: 10.1073/pnas.0710533105. Epub 2008 Apr 11.

11.

Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli.

Babu M, Arnold R, Bundalovic-Torma C, Gagarinova A, Wong KS, Kumar A, Stewart G, Samanfar B, Aoki H, Wagih O, Vlasblom J, Phanse S, Lad K, Yeou Hsiung Yu A, Graham C, Jin K, Brown E, Golshani A, Kim P, Moreno-Hagelsieb G, Greenblatt J, Houry WA, Parkinson J, Emili A.

PLoS Genet. 2014 Feb 20;10(2):e1004120. doi: 10.1371/journal.pgen.1004120. eCollection 2014 Feb.

12.

Synthetic genetic interactions allele dependence, uses, and conservation.

Gray JV, Krause SA.

Adv Genet. 2009;66:61-84. doi: 10.1016/S0065-2660(09)66003-X.

PMID:
19737638
13.

SGAM: an array-based approach for high-resolution genetic mapping in Saccharomyces cerevisiae.

Costanzo M, Boone C.

Methods Mol Biol. 2009;548:37-53. doi: 10.1007/978-1-59745-540-4_3.

PMID:
19521818
14.

Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens.

Fromont-Racine M, Rain JC, Legrain P.

Nat Genet. 1997 Jul;16(3):277-82.

PMID:
9207794
15.

Modular epistasis in yeast metabolism.

Segrè D, Deluna A, Church GM, Kishony R.

Nat Genet. 2005 Jan;37(1):77-83. Epub 2004 Dec 12.

PMID:
15592468
16.

High-throughput, quantitative analyses of genetic interactions in E. coli.

Typas A, Nichols RJ, Siegele DA, Shales M, Collins SR, Lim B, Braberg H, Yamamoto N, Takeuchi R, Wanner BL, Mori H, Weissman JS, Krogan NJ, Gross CA.

Nat Methods. 2008 Sep;5(9):781-7.

17.

Synthetic genetic array analysis in Saccharomyces cerevisiae.

Tong AH, Boone C.

Methods Mol Biol. 2006;313:171-92.

PMID:
16118434
18.

Synthetic Genetic Arrays: Automation of Yeast Genetics.

Kuzmin E, Costanzo M, Andrews B, Boone C.

Cold Spring Harb Protoc. 2016 Apr 1;2016(4):pdb.top086652. doi: 10.1101/pdb.top086652.

PMID:
27037078
19.

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225. doi: 10.1186/1471-2105-9-225.

20.

Predicting essential genes based on network and sequence analysis.

Hwang YC, Lin CC, Chang JY, Mori H, Juan HF, Huang HC.

Mol Biosyst. 2009 Dec;5(12):1672-8. doi: 10.1039/B900611G.

PMID:
19452048

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