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Items: 1 to 20 of 94

1.

lincRNAs act in the circuitry controlling pluripotency and differentiation.

Guttman M, Donaghey J, Carey BW, Garber M, Grenier JK, Munson G, Young G, Lucas AB, Ach R, Bruhn L, Yang X, Amit I, Meissner A, Regev A, Rinn JL, Root DE, Lander ES.

Nature. 2011 Aug 28;477(7364):295-300. doi: 10.1038/nature10398.

2.

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.

Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea Morales D, Thomas K, Presser A, Bernstein BE, van Oudenaarden A, Regev A, Lander ES, Rinn JL.

Proc Natl Acad Sci U S A. 2009 Jul 14;106(28):11667-72. doi: 10.1073/pnas.0904715106. Epub 2009 Jul 1.

3.

Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells.

Loewer S, Cabili MN, Guttman M, Loh YH, Thomas K, Park IH, Garber M, Curran M, Onder T, Agarwal S, Manos PD, Datta S, Lander ES, Schlaeger TM, Daley GQ, Rinn JL.

Nat Genet. 2010 Dec;42(12):1113-7. doi: 10.1038/ng.710. Epub 2010 Nov 7. Erratum in: Nat Genet. 2010 Dec;42(12): 3 p following 1117.

4.

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation.

Dinger ME, Amaral PP, Mercer TR, Pang KC, Bruce SJ, Gardiner BB, Askarian-Amiri ME, Ru K, Soldà G, Simons C, Sunkin SM, Crowe ML, Grimmond SM, Perkins AC, Mattick JS.

Genome Res. 2008 Sep;18(9):1433-45. doi: 10.1101/gr.078378.108. Epub 2008 Jun 18.

5.

Pontin functions as an essential coactivator for Oct4-dependent lincRNA expression in mouse embryonic stem cells.

Boo K, Bhin J, Jeon Y, Kim J, Shin HJ, Park JE, Kim K, Kim CR, Jang H, Kim IH, Kim VN, Hwang D, Lee H, Baek SH.

Nat Commun. 2015 Apr 10;6:6810. doi: 10.1038/ncomms7810.

6.

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.

Guttman M, Amit I, Garber M, French C, Lin MF, Feldser D, Huarte M, Zuk O, Carey BW, Cassady JP, Cabili MN, Jaenisch R, Mikkelsen TS, Jacks T, Hacohen N, Bernstein BE, Kellis M, Regev A, Rinn JL, Lander ES.

Nature. 2009 Mar 12;458(7235):223-7. doi: 10.1038/nature07672. Epub 2009 Feb 1.

7.

Long noncoding RNAs: new players in the molecular mechanism for maintenance and differentiation of pluripotent stem cells.

Ghosal S, Das S, Chakrabarti J.

Stem Cells Dev. 2013 Aug 15;22(16):2240-53. doi: 10.1089/scd.2013.0014. Epub 2013 May 14. Review.

8.

Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors.

Ng SY, Johnson R, Stanton LW.

EMBO J. 2012 Feb 1;31(3):522-33. doi: 10.1038/emboj.2011.459. Epub 2011 Dec 23.

9.

Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution.

Ulitsky I, Shkumatava A, Jan CH, Sive H, Bartel DP.

Cell. 2011 Dec 23;147(7):1537-50. doi: 10.1016/j.cell.2011.11.055. Erratum in: Cell. 2012 Oct 26;151(3):684-6.

10.

The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming.

Durruthy-Durruthy J, Sebastiano V, Wossidlo M, Cepeda D, Cui J, Grow EJ, Davila J, Mall M, Wong WH, Wysocka J, Au KF, Reijo Pera RA.

Nat Genet. 2016 Jan;48(1):44-52. doi: 10.1038/ng.3449. Epub 2015 Nov 23.

11.

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.

Wang KC, Yang YW, Liu B, Sanyal A, Corces-Zimmerman R, Chen Y, Lajoie BR, Protacio A, Flynn RA, Gupta RA, Wysocka J, Lei M, Dekker J, Helms JA, Chang HY.

Nature. 2011 Apr 7;472(7341):120-4. doi: 10.1038/nature09819. Epub 2011 Mar 20.

12.

Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency.

Hawkins RD, Hon GC, Yang C, Antosiewicz-Bourget JE, Lee LK, Ngo QM, Klugman S, Ching KA, Edsall LE, Ye Z, Kuan S, Yu P, Liu H, Zhang X, Green RD, Lobanenkov VV, Stewart R, Thomson JA, Ren B.

Cell Res. 2011 Oct;21(10):1393-409. doi: 10.1038/cr.2011.146. Epub 2011 Aug 30.

13.

Hepatic Long Intergenic Noncoding RNAs: High Promoter Conservation and Dynamic, Sex-Dependent Transcriptional Regulation by Growth Hormone.

Melia T, Hao P, Yilmaz F, Waxman DJ.

Mol Cell Biol. 2015 Oct 12;36(1):50-69. doi: 10.1128/MCB.00861-15. Print 2016 Jan 1.

14.

Dax-1 knockdown in mouse embryonic stem cells induces loss of pluripotency and multilineage differentiation.

Khalfallah O, Rouleau M, Barbry P, Bardoni B, Lalli E.

Stem Cells. 2009 Jul;27(7):1529-37. doi: 10.1002/stem.78.

15.

Stat3 and c-Myc genome-wide promoter occupancy in embryonic stem cells.

Kidder BL, Yang J, Palmer S.

PLoS One. 2008;3(12):e3932. doi: 10.1371/journal.pone.0003932. Epub 2008 Dec 11.

16.

Molecular mechanisms involved in self-renewal and pluripotency of embryonic stem cells.

Liu N, Lu M, Tian X, Han Z.

J Cell Physiol. 2007 May;211(2):279-86. Review.

PMID:
17195167
17.

Factor mediated gene priming in pluripotent stem cells sets the stage for lineage specification.

Dillon N.

Bioessays. 2012 Mar;34(3):194-204. doi: 10.1002/bies.201100137. Epub 2012 Jan 13. Review.

PMID:
22247014
18.

RNA-based regulation of pluripotency.

Wright JE, Ciosk R.

Trends Genet. 2013 Feb;29(2):99-107. doi: 10.1016/j.tig.2012.10.007. Epub 2012 Nov 10. Review.

PMID:
23146412
19.

Long non-coding RNAs in stem cell pluripotency.

Ng SY, Stanton LW.

Wiley Interdiscip Rev RNA. 2013 Jan-Feb;4(1):121-8. doi: 10.1002/wrna.1146. Epub 2012 Nov 8.

PMID:
23139157
20.

Biosynthesis of ribosomal RNA in nucleoli regulates pluripotency and differentiation ability of pluripotent stem cells.

Watanabe-Susaki K, Takada H, Enomoto K, Miwata K, Ishimine H, Intoh A, Ohtaka M, Nakanishi M, Sugino H, Asashima M, Kurisaki A.

Stem Cells. 2014 Dec;32(12):3099-111. doi: 10.1002/stem.1825.

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