Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 96

1.

A transcriptomic atlas of mouse neocortical layers.

Belgard TG, Marques AC, Oliver PL, Abaan HO, Sirey TM, Hoerder-Suabedissen A, García-Moreno F, Molnár Z, Margulies EH, Ponting CP.

Neuron. 2011 Aug 25;71(4):605-16. doi: 10.1016/j.neuron.2011.06.039.

2.

Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain.

Seemann SE, Sunkin SM, Hawrylycz MJ, Ruzzo WL, Gorodkin J.

BMC Genomics. 2012 May 31;13:214. doi: 10.1186/1471-2164-13-214.

3.

Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system.

Sunkin SM, Ng L, Lau C, Dolbeare T, Gilbert TL, Thompson CL, Hawrylycz M, Dang C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D996-D1008. doi: 10.1093/nar/gks1042. Epub 2012 Nov 28.

4.

GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.

Risueño A, Fontanillo C, Dinger ME, De Las Rivas J.

BMC Bioinformatics. 2010 Apr 29;11:221. doi: 10.1186/1471-2105-11-221.

5.

Developing the eHistology Atlas.

Richardson L, Graham L, Moss J, Burton N, Roochun Y, Armit C, Baldock RA.

Database (Oxford). 2015 Oct 24;2015. pii: bav105. doi: 10.1093/database/bav105. Print 2015.

6.

The Allen Human Brain Atlas: comprehensive gene expression mapping of the human brain.

Shen EH, Overly CC, Jones AR.

Trends Neurosci. 2012 Dec;35(12):711-4. doi: 10.1016/j.tins.2012.09.005. Epub 2012 Oct 5.

PMID:
23041053
7.

An anatomically comprehensive atlas of the adult human brain transcriptome.

Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, van de Lagemaat LN, Smith KA, Ebbert A, Riley ZL, Abajian C, Beckmann CF, Bernard A, Bertagnolli D, Boe AF, Cartagena PM, Chakravarty MM, Chapin M, Chong J, Dalley RA, David Daly B, Dang C, Datta S, Dee N, Dolbeare TA, Faber V, Feng D, Fowler DR, Goldy J, Gregor BW, Haradon Z, Haynor DR, Hohmann JG, Horvath S, Howard RE, Jeromin A, Jochim JM, Kinnunen M, Lau C, Lazarz ET, Lee C, Lemon TA, Li L, Li Y, Morris JA, Overly CC, Parker PD, Parry SE, Reding M, Royall JJ, Schulkin J, Sequeira PA, Slaughterbeck CR, Smith SC, Sodt AJ, Sunkin SM, Swanson BE, Vawter MP, Williams D, Wohnoutka P, Zielke HR, Geschwind DH, Hof PR, Smith SM, Koch C, Grant SGN, Jones AR.

Nature. 2012 Sep 20;489(7416):391-399. doi: 10.1038/nature11405.

8.

Rapid turnover of long noncoding RNAs and the evolution of gene expression.

Kutter C, Watt S, Stefflova K, Wilson MD, Goncalves A, Ponting CP, Odom DT, Marques AC.

PLoS Genet. 2012;8(7):e1002841. doi: 10.1371/journal.pgen.1002841. Epub 2012 Jul 26.

9.

Comparative transcriptome analysis of epithelial and fiber cells in newborn mouse lenses with RNA sequencing.

Hoang TV, Kumar PK, Sutharzan S, Tsonis PA, Liang C, Robinson ML.

Mol Vis. 2014 Nov 4;20:1491-517. eCollection 2014.

10.

Specific expression of long noncoding RNAs in the mouse brain.

Mercer TR, Dinger ME, Sunkin SM, Mehler MF, Mattick JS.

Proc Natl Acad Sci U S A. 2008 Jan 15;105(2):716-21. doi: 10.1073/pnas.0706729105. Epub 2008 Jan 9.

11.

Patterned expression of ion channel genes in mouse dorsal raphe nucleus determined with the Allen Mouse Brain Atlas.

Templin JS, Bang SJ, Soiza-Reilly M, Berde CB, Commons KG.

Brain Res. 2012 May 31;1457:1-12. doi: 10.1016/j.brainres.2012.03.066. Epub 2012 Apr 4.

12.

The tissue-specific transcriptomic landscape of the mid-gestational mouse embryo.

Werber M, Wittler L, Timmermann B, Grote P, Herrmann BG.

Development. 2014 Jun;141(11):2325-30. doi: 10.1242/dev.105858. Epub 2014 May 6.

13.

Genome-wide analysis of long noncoding RNA stability.

Clark MB, Johnston RL, Inostroza-Ponta M, Fox AH, Fortini E, Moscato P, Dinger ME, Mattick JS.

Genome Res. 2012 May;22(5):885-98. doi: 10.1101/gr.131037.111. Epub 2012 Mar 9.

14.

Laminar and temporal expression dynamics of coding and noncoding RNAs in the mouse neocortex.

Fertuzinhos S, Li M, Kawasawa YI, Ivic V, Franjic D, Singh D, Crair M, Sestan N.

Cell Rep. 2014 Mar 13;6(5):938-50. doi: 10.1016/j.celrep.2014.01.036. Epub 2014 Feb 20.

15.

Structured RNAs and synteny regions in the pig genome.

Anthon C, Tafer H, Havgaard JH, Thomsen B, Hedegaard J, Seemann SE, Pundhir S, Kehr S, Bartschat S, Nielsen M, Nielsen RO, Fredholm M, Stadler PF, Gorodkin J.

BMC Genomics. 2014 Jun 10;15:459. doi: 10.1186/1471-2164-15-459.

16.

A high-resolution anatomical atlas of the transcriptome in the mouse embryo.

Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M, Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E, Mehmeti S, Dagand E, Schrinner S, Nürnberger A, Schmidt K, Metz K, Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S, Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN, Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S, Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P, Reymond A, Davidson DR, Dollé P, Antonarakis SE, Yaspo ML, Martinez S, Baldock RA, Eichele G, Ballabio A.

PLoS Biol. 2011 Jan 18;9(1):e1000582. doi: 10.1371/journal.pbio.1000582.

17.

Areal and laminar differentiation in the mouse neocortex using large scale gene expression data.

Hawrylycz M, Bernard A, Lau C, Sunkin SM, Chakravarty MM, Lein ES, Jones AR, Ng L.

Methods. 2010 Feb;50(2):113-21. doi: 10.1016/j.ymeth.2009.09.005. Epub 2009 Sep 30.

PMID:
19800006
18.

A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex.

Ullmann JF, Watson C, Janke AL, Kurniawan ND, Reutens DC.

Neuroimage. 2013 Sep;78:196-203. doi: 10.1016/j.neuroimage.2013.04.008. Epub 2013 Apr 12.

PMID:
23587687
19.

Transcriptional landscape of the prenatal human brain.

Miller JA, Ding SL, Sunkin SM, Smith KA, Ng L, Szafer A, Ebbert A, Riley ZL, Royall JJ, Aiona K, Arnold JM, Bennet C, Bertagnolli D, Brouner K, Butler S, Caldejon S, Carey A, Cuhaciyan C, Dalley RA, Dee N, Dolbeare TA, Facer BA, Feng D, Fliss TP, Gee G, Goldy J, Gourley L, Gregor BW, Gu G, Howard RE, Jochim JM, Kuan CL, Lau C, Lee CK, Lee F, Lemon TA, Lesnar P, McMurray B, Mastan N, Mosqueda N, Naluai-Cecchini T, Ngo NK, Nyhus J, Oldre A, Olson E, Parente J, Parker PD, Parry SE, Stevens A, Pletikos M, Reding M, Roll K, Sandman D, Sarreal M, Shapouri S, Shapovalova NV, Shen EH, Sjoquist N, Slaughterbeck CR, Smith M, Sodt AJ, Williams D, Zöllei L, Fischl B, Gerstein MB, Geschwind DH, Glass IA, Hawrylycz MJ, Hevner RF, Huang H, Jones AR, Knowles JA, Levitt P, Phillips JW, Sestan N, Wohnoutka P, Dang C, Bernard A, Hohmann JG, Lein ES.

Nature. 2014 Apr 10;508(7495):199-206. doi: 10.1038/nature13185. Epub 2014 Apr 2.

20.

High-resolution gene expression atlases for adult and developing mouse brain and spinal cord.

Henry AM, Hohmann JG.

Mamm Genome. 2012 Oct;23(9-10):539-49. doi: 10.1007/s00335-012-9406-2. Epub 2012 Jul 26. Review.

PMID:
22832508

Supplemental Content

Support Center