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Items: 1 to 20 of 154

1.

Identification and experimental validation of splicing regulatory elements in Drosophila melanogaster reveals functionally conserved splicing enhancers in metazoans.

Brooks AN, Aspden JL, Podgornaia AI, Rio DC, Brenner SE.

RNA. 2011 Oct;17(10):1884-94. doi: 10.1261/rna.2696311. Epub 2011 Aug 24.

2.

Variation in sequence and organization of splicing regulatory elements in vertebrate genes.

Yeo G, Hoon S, Venkatesh B, Burge CB.

Proc Natl Acad Sci U S A. 2004 Nov 2;101(44):15700-5. Epub 2004 Oct 25.

3.

Computational prediction of splicing regulatory elements shared by Tetrapoda organisms.

Churbanov A, Vorechovsk√Ĺ I, Hicks C.

BMC Genomics. 2009 Nov 4;10:508. doi: 10.1186/1471-2164-10-508.

4.
6.

Intronic alternative splicing regulators identified by comparative genomics in nematodes.

Kabat JL, Barberan-Soler S, McKenna P, Clawson H, Farrer T, Zahler AM.

PLoS Comput Biol. 2006 Jul 14;2(7):e86. Epub 2006 Jun 5.

7.

RNA landscape of evolution for optimal exon and intron discrimination.

Zhang C, Li WH, Krainer AR, Zhang MQ.

Proc Natl Acad Sci U S A. 2008 Apr 15;105(15):5797-802. doi: 10.1073/pnas.0801692105. Epub 2008 Apr 7.

8.

Evidence for deep phylogenetic conservation of exonic splice-related constraints: splice-related skews at exonic ends in the brown alga Ectocarpus are common and resemble those seen in humans.

Wu X, Tronholm A, C√°ceres EF, Tovar-Corona JM, Chen L, Urrutia AO, Hurst LD.

Genome Biol Evol. 2013;5(9):1731-45. doi: 10.1093/gbe/evt115.

9.

Intronic splicing enhancers, cognate splicing factors and context-dependent regulation rules.

Wang Y, Ma M, Xiao X, Wang Z.

Nat Struct Mol Biol. 2012 Oct;19(10):1044-52. doi: 10.1038/nsmb.2377. Epub 2012 Sep 16.

11.

Purifying Selection on Exonic Splice Enhancers in Intronless Genes.

Savisaar R, Hurst LD.

Mol Biol Evol. 2016 Jun;33(6):1396-418. doi: 10.1093/molbev/msw018. Epub 2016 Jan 23.

12.

A systematic analysis of intronic sequences downstream of 5' splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation.

Aznarez I, Barash Y, Shai O, He D, Zielenski J, Tsui LC, Parkinson J, Frey BJ, Rommens JM, Blencowe BJ.

Genome Res. 2008 Aug;18(8):1247-58. doi: 10.1101/gr.073155.107. Epub 2008 May 2.

13.

Identification of conserved splicing motifs in mutually exclusive exons of 15 insect species.

Buendia P, Tyree J, Loredo R, Hsu SN.

BMC Genomics. 2012 Apr 12;13 Suppl 2:S1. doi: 10.1186/1471-2164-13-S2-S1.

14.
15.

Structural and functional conservation of the Drosophila doublesex splicing enhancer repeat elements.

Hertel KJ, Lynch KW, Hsiao EC, Liu EH, Maniatis T.

RNA. 1996 Oct;2(10):969-81.

16.

Modulation of alternative splicing by long-range RNA structures in Drosophila.

Raker VA, Mironov AA, Gelfand MS, Pervouchine DD.

Nucleic Acids Res. 2009 Aug;37(14):4533-44. doi: 10.1093/nar/gkp407. Epub 2009 May 22.

17.

Predictive identification of exonic splicing enhancers in human genes.

Fairbrother WG, Yeh RF, Sharp PA, Burge CB.

Science. 2002 Aug 9;297(5583):1007-13. Epub 2002 Jul 11.

18.

Large introns in relation to alternative splicing and gene evolution: a case study of Drosophila bruno-3.

Kandul NP, Noor MA.

BMC Genet. 2009 Oct 19;10:67. doi: 10.1186/1471-2156-10-67.

19.
20.

Effect of exonic splicing regulation on synonymous codon usage in alternatively spliced exons of Dscam.

Takahashi A.

BMC Evol Biol. 2009 Aug 27;9:214. doi: 10.1186/1471-2148-9-214.

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