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Items: 1 to 20 of 162

1.

Biological interaction networks are conserved at the module level.

Zinman GE, Zhong S, Bar-Joseph Z.

BMC Syst Biol. 2011 Aug 23;5:134. doi: 10.1186/1752-0509-5-134.

2.

An integrative approach to inferring biologically meaningful gene modules.

Cho JH, Wang K, Galas DJ.

BMC Syst Biol. 2011 Jul 26;5:117. doi: 10.1186/1752-0509-5-117.

3.

Protein-protein interactions more conserved within species than across species.

Mika S, Rost B.

PLoS Comput Biol. 2006 Jul 21;2(7):e79. Epub 2006 May 18.

4.

Identifying conserved protein complexes between species by constructing interolog networks.

Nguyen PV, Srihari S, Leong HW.

BMC Bioinformatics. 2013;14 Suppl 16:S8. doi: 10.1186/1471-2105-14-S16-S8. Epub 2013 Oct 22.

5.

Systems biology approach reveals possible evolutionarily conserved moonlighting functions for enolase.

Paludo GP, Lorenzatto KR, Bonatto D, Ferreira HB.

Comput Biol Chem. 2015 Oct;58:1-8. doi: 10.1016/j.compbiolchem.2015.04.010. Epub 2015 Apr 21.

PMID:
25978602
6.

Identification of conserved protein complexes by module alignment.

Sun PG, Gao L, Song J.

Int J Data Min Bioinform. 2011;5(6):593-610.

PMID:
22295746
7.

Employing conservation of co-expression to improve functional inference.

Daub CO, Sonnhammer EL.

BMC Syst Biol. 2008 Sep 22;2:81. doi: 10.1186/1752-0509-2-81.

8.

Protein complex-based analysis framework for high-throughput data sets.

Vinayagam A, Hu Y, Kulkarni M, Roesel C, Sopko R, Mohr SE, Perrimon N.

Sci Signal. 2013 Feb 26;6(264):rs5. doi: 10.1126/scisignal.2003629.

9.

Conserved rules govern genetic interaction degree across species.

Koch EN, Costanzo M, Bellay J, Deshpande R, Chatfield-Reed K, Chua G, D'Urso G, Andrews BJ, Boone C, Myers CL.

Genome Biol. 2012 Jul 2;13(7):R57. doi: 10.1186/gb-2012-13-7-r57.

10.

Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.

Babu M, Gagarinova A, Greenblatt J, Emili A.

Methods Mol Biol. 2011;765:125-53. doi: 10.1007/978-1-61779-197-0_9.

PMID:
21815091
11.

Comparison of protein interaction networks reveals species conservation and divergence.

Liang Z, Xu M, Teng M, Niu L.

BMC Bioinformatics. 2006 Oct 17;7:457.

12.
13.

Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets.

Zhou H, Wong L.

BMC Genomics. 2011 Nov 30;12 Suppl 3:S20. doi: 10.1186/1471-2164-12-S3-S20. Epub 2011 Nov 30.

14.

Comparative analysis of function and interaction of transcription factors in nematodes: extensive conservation of orthology coupled to rapid sequence evolution.

Haerty W, Artieri C, Khezri N, Singh RS, Gupta BP.

BMC Genomics. 2008 Aug 27;9:399. doi: 10.1186/1471-2164-9-399.

15.

Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP.

Hawkins T, Chitale M, Kihara D.

BMC Bioinformatics. 2010 May 19;11:265. doi: 10.1186/1471-2105-11-265.

16.

Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes.

Dixon SJ, Fedyshyn Y, Koh JL, Prasad TS, Chahwan C, Chua G, Toufighi K, Baryshnikova A, Hayles J, Hoe KL, Kim DU, Park HO, Myers CL, Pandey A, Durocher D, Andrews BJ, Boone C.

Proc Natl Acad Sci U S A. 2008 Oct 28;105(43):16653-8. doi: 10.1073/pnas.0806261105. Epub 2008 Oct 17.

17.

Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development.

Vermeirssen V, Joshi A, Michoel T, Bonnet E, Casneuf T, Van de Peer Y.

Mol Biosyst. 2009 Dec;5(12):1817-30. doi: 10.1039/B908108a. Epub 2009 Jul 17.

PMID:
19763340
18.

Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.

Babu M, Gagarinova A, Emili A.

Methods Mol Biol. 2011;781:99-126. doi: 10.1007/978-1-61779-276-2_7.

PMID:
21877280
19.
20.

Predicting genetic interactions with random walks on biological networks.

Chipman KC, Singh AK.

BMC Bioinformatics. 2009 Jan 12;10:17. doi: 10.1186/1471-2105-10-17.

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