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Items: 1 to 20 of 108

1.

Competitive genomic screens of barcoded yeast libraries.

Smith AM, Durbic T, Oh J, Urbanus M, Proctor M, Heisler LE, Giaever G, Nislow C.

J Vis Exp. 2011 Aug 11;(54). pii: 2864. doi: 10.3791/2864.

2.

Genome-wide analysis of barcoded Saccharomyces cerevisiae gene-deletion mutants in pooled cultures.

Pierce SE, Davis RW, Nislow C, Giaever G.

Nat Protoc. 2007;2(11):2958-74.

PMID:
18007632
3.

Signature-tagged mutagenesis to characterize genes through competitive selection of bar-coded genome libraries.

Oh J, Nislow C.

Methods Mol Biol. 2011;765:225-52. doi: 10.1007/978-1-61779-197-0_14.

PMID:
21815096
4.

Chemogenomic approaches to elucidation of gene function and genetic pathways.

Pierce SE, Davis RW, Nislow C, Giaever G.

Methods Mol Biol. 2009;548:115-43. doi: 10.1007/978-1-59745-540-4_7.

PMID:
19521822
5.

Quantitative phenotyping via deep barcode sequencing.

Smith AM, Heisler LE, Mellor J, Kaper F, Thompson MJ, Chee M, Roth FP, Giaever G, Nislow C.

Genome Res. 2009 Oct;19(10):1836-42. doi: 10.1101/gr.093955.109. Epub 2009 Jul 21.

6.

Mutant power: using mutant allele collections for yeast functional genomics.

Norman KL, Kumar A.

Brief Funct Genomics. 2016 Mar;15(2):75-84. doi: 10.1093/bfgp/elv042. Epub 2015 Oct 9. Review.

7.

High-throughput creation of a whole-genome collection of yeast knockout strains.

Chu AM, Davis RW.

Methods Mol Biol. 2008;416:205-20. doi: 10.1007/978-1-59745-321-9_14.

PMID:
18392970
8.

Functional analysis with a barcoder yeast gene overexpression system.

Douglas AC, Smith AM, Sharifpoor S, Yan Z, Durbic T, Heisler LE, Lee AY, Ryan O, Göttert H, Surendra A, van Dyk D, Giaever G, Boone C, Nislow C, Andrews BJ.

G3 (Bethesda). 2012 Oct;2(10):1279-89. doi: 10.1534/g3.112.003400. Epub 2012 Oct 1.

9.

Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.

Zhang F, Christiansen L, Thomas J, Pokholok D, Jackson R, Morrell N, Zhao Y, Wiley M, Welch E, Jaeger E, Granat A, Norberg SJ, Halpern A, C Rogert M, Ronaghi M, Shendure J, Gormley N, Gunderson KL, Steemers FJ.

Nat Biotechnol. 2017 Sep;35(9):852-857. doi: 10.1038/nbt.3897. Epub 2017 Jun 26.

PMID:
28650462
10.

A comparative analysis of DNA barcode microarray feature size.

Ammar R, Smith AM, Heisler LE, Giaever G, Nislow C.

BMC Genomics. 2009 Oct 13;10:471. doi: 10.1186/1471-2164-10-471.

11.

Generation and analysis of a barcode-tagged insertion mutant library in the fission yeast Schizosaccharomyces pombe.

Chen BR, Hale DC, Ciolek PJ, Runge KW.

BMC Genomics. 2012 May 3;13:161. doi: 10.1186/1471-2164-13-161.

12.

Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing.

Lefrançois P, Euskirchen GM, Auerbach RK, Rozowsky J, Gibson T, Yellman CM, Gerstein M, Snyder M.

BMC Genomics. 2009 Jan 21;10:37. doi: 10.1186/1471-2164-10-37.

13.

Identification of Links Between Cellular Pathways by Genetic Interaction Mapping (GIM).

Malabat C, Saveanu C.

Methods Mol Biol. 2016;1361:325-43. doi: 10.1007/978-1-4939-3079-1_18.

14.

Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons.

Wetmore KM, Price MN, Waters RJ, Lamson JS, He J, Hoover CA, Blow MJ, Bristow J, Butland G, Arkin AP, Deutschbauer A.

MBio. 2015 May 12;6(3):e00306-15. doi: 10.1128/mBio.00306-15.

15.

From barcodes to genomes: extending the concept of DNA barcoding.

Coissac E, Hollingsworth PM, Lavergne S, Taberlet P.

Mol Ecol. 2016 Apr;25(7):1423-8. doi: 10.1111/mec.13549. Epub 2016 Mar 14.

PMID:
26821259
16.

Structural and functional-annotation of an equine whole genome oligoarray.

Bright LA, Burgess SC, Chowdhary B, Swiderski CE, McCarthy FM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S8. doi: 10.1186/1471-2105-10-S11-S8.

17.

Generating barcoded libraries for multiplex high-throughput sequencing.

Knapp M, Stiller M, Meyer M.

Methods Mol Biol. 2012;840:155-70. doi: 10.1007/978-1-61779-516-9_19.

PMID:
22237533
18.

Barcode sequencing for understanding drug-gene interactions.

Smith AM, Durbic T, Kittanakom S, Giaever G, Nislow C.

Methods Mol Biol. 2012;910:55-69. doi: 10.1007/978-1-61779-965-5_4.

PMID:
22821592
19.

Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.

Babu M, Gagarinova A, Greenblatt J, Emili A.

Methods Mol Biol. 2011;765:125-53. doi: 10.1007/978-1-61779-197-0_9.

PMID:
21815091
20.

An Updated Collection of Sequence Barcoded Temperature-Sensitive Alleles of Yeast Essential Genes.

Kofoed M, Milbury KL, Chiang JH, Sinha S, Ben-Aroya S, Giaever G, Nislow C, Hieter P, Stirling PC.

G3 (Bethesda). 2015 Jul 14;5(9):1879-87. doi: 10.1534/g3.115.019174.

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