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Items: 1 to 20 of 79

1.

A user-friendly guide on how to obtain and accurately interpret information from metabolic databases.

Cadenas C, Marchan R.

Arch Toxicol. 2011 Sep;85(9):1013-4. doi: 10.1007/s00204-011-0744-8. No abstract available.

PMID:
21850519
2.

ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.

Pitkänen E, Akerlund A, Rantanen A, Jouhten P, Ukkonen E.

J Integr Bioinform. 2008 Aug 25;5(2). doi: 10.2390/biecoll-jib-2008-102.

PMID:
20134058
3.

Chemistry in bioinformatics.

Murray-Rust P, Mitchell JB, Rzepa HS.

BMC Bioinformatics. 2005 Jun 7;6:141.

4.

Developing a modern web interface for database-driven bioinformatics tools.

Khandheria P, Garner HR.

IEEE Eng Med Biol Mag. 2007 Mar-Apr;26(2):96-8. No abstract available.

PMID:
17441614
5.

An integrative approach for biological data mining and visualisation.

Gopalacharyulu PV, Lindfors E, Miettinen J, Bounsaythip CK, Oresic M.

Int J Data Min Bioinform. 2008;2(1):54-77.

PMID:
18399328
6.

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

BMC Bioinformatics. 2006 Mar 28;7:176.

7.

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.

8.

FBA-SimVis: interactive visualization of constraint-based metabolic models.

Grafahrend-Belau E, Klukas C, Junker BH, Schreiber F.

Bioinformatics. 2009 Oct 15;25(20):2755-7. doi: 10.1093/bioinformatics/btp408. Epub 2009 Jul 3.

9.

Corrigendum for Elliott,B. et al., 'PathCase pathways database system', Bioinformatics, Nov. 2008, 24(21), pp. 2526-2533.

Elliott B, Kirac M, Cakmak A, Yavas G, Mayes S, Cheng E, Wang Y, Gupta C, Ozsoyoglu G, Ozsoyoglu ZM.

Bioinformatics. 2009 Oct 15;25(20):2773. doi: 10.1093/bioinformatics/btp520. Epub 2009 Aug 27. No abstract available.

PMID:
19713414
10.

Mashups mix data into global service.

Butler D.

Nature. 2006 Jan 5;439(7072):6-7. No abstract available.

PMID:
16397468
11.

Inference system using softcomputing and mixed data applied in metabolic pathway datamining.

Arredondo T, Candel D, Leiva M, Dombrovskaia L, Agulló L, Seeger M.

Int J Data Min Bioinform. 2012;6(1):61-85.

PMID:
22479819
12.

Arcadia: a visualization tool for metabolic pathways.

Villéger AC, Pettifer SR, Kell DB.

Bioinformatics. 2010 Jun 1;26(11):1470-1. doi: 10.1093/bioinformatics/btq154. Epub 2010 May 7.

13.

2.5D visualisation of overlapping biological networks.

Fung DC, Hong SH, Koschützki D, Schreiber F, Xu K.

J Integr Bioinform. 2008 Nov 10;5(1). doi: 10.2390/biecoll-jib-2008-90.

PMID:
20134057
14.

cPath: open source software for collecting, storing, and querying biological pathways.

Cerami EG, Bader GD, Gross BE, Sander C.

BMC Bioinformatics. 2006 Nov 13;7:497.

15.

BMC Bioinformatics comes of age.

Cockerill MJ.

BMC Bioinformatics. 2005 Jun 7;6:140. No abstract available.

16.

A pitfall of wiki solution for biological databases.

Arita M.

Brief Bioinform. 2009 May;10(3):295-6. doi: 10.1093/bib/bbn053. Epub 2008 Dec 6.

PMID:
19060305
17.

VRML metabolic network visualizer.

Rojdestvenski I.

Comput Biol Med. 2003 Mar;33(2):169-82.

PMID:
12565729
18.

Workflow based framework for life science informatics.

Tiwari A, Sekhar AK.

Comput Biol Chem. 2007 Oct;31(5-6):305-19. Epub 2007 Aug 19. Review.

PMID:
17931570
19.

Special issue: integration of OMICs datasets into metabolic pathway analysis.

Kaleta C, de Figueiredo LF, Heiland I, Klamt S, Schuster S.

Biosystems. 2011 Aug;105(2):107-8. doi: 10.1016/j.biosystems.2011.05.008. Epub 2011 May 18. No abstract available.

PMID:
21619911
20.

Life sciences data and application integration with B-fabric.

Türker C, Akal F, Schlapbach R.

J Integr Bioinform. 2011 Jul 20;8(2):159. doi: 10.2390/biecoll-jib-2011-159.

PMID:
21772064

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