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Items: 1 to 20 of 75

1.

Digital gene expression for non-model organisms.

Hong LZ, Li J, Schmidt-Küntzel A, Warren WC, Barsh GS.

Genome Res. 2011 Nov;21(11):1905-15. doi: 10.1101/gr.122135.111. Erratum in: Genome Res. 2012 Oct;22(10):2088.

2.

SuperSAGE: a modern platform for genome-wide quantitative transcript profiling.

Matsumura H, Krüger DH, Kahl G, Terauchi R.

Curr Pharm Biotechnol. 2008 Oct;9(5):368-74. Review.

PMID:
18855689
3.

Novel software package for cross-platform transcriptome analysis (CPTRA).

Zhou X, Su Z, Sammons RD, Peng Y, Tranel PJ, Stewart CN Jr, Yuan JS.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S16. doi: 10.1186/1471-2105-10-S11-S16.

4.

[Transcriptomes for serial analysis of gene expression].

Marti J, Piquemal D, Manchon L, Commes T.

J Soc Biol. 2002;196(4):303-7. Review. French.

PMID:
12645300
5.

Next-generation tag sequencing for cancer gene expression profiling.

Morrissy AS, Morin RD, Delaney A, Zeng T, McDonald H, Jones S, Zhao Y, Hirst M, Marra MA.

Genome Res. 2009 Oct;19(10):1825-35. doi: 10.1101/gr.094482.109.

6.

High throughput transcriptome analysis of lipid metabolism in Syrian hamster liver in absence of an annotated genome.

Schmucki R, Berrera M, Küng E, Lee S, Thasler WE, Grüner S, Ebeling M, Certa U.

BMC Genomics. 2013 Apr 10;14:237. doi: 10.1186/1471-2164-14-237.

7.

Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.

8.

Differential gene expression in the siphonophore Nanomia bijuga (Cnidaria) assessed with multiple next-generation sequencing workflows.

Siebert S, Robinson MD, Tintori SC, Goetz F, Helm RR, Smith SA, Shaner N, Haddock SH, Dunn CW.

PLoS One. 2011;6(7):e22953. doi: 10.1371/journal.pone.0022953.

9.

Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing.

Mane SP, Evans C, Cooper KL, Crasta OR, Folkerts O, Hutchison SK, Harkins TT, Thierry-Mieg D, Thierry-Mieg J, Jensen RV.

BMC Genomics. 2009 Jun 12;10:264. doi: 10.1186/1471-2164-10-264.

10.

FunnyBase: a systems level functional annotation of Fundulus ESTs for the analysis of gene expression.

Paschall JE, Oleksiak MF, VanWye JD, Roach JL, Whitehead JA, Wyckoff GJ, Kolell KJ, Crawford DL.

BMC Genomics. 2004 Dec 20;5(1):96.

11.

Transcriptome profiling of early developing cotton fiber by deep-sequencing reveals significantly differential expression of genes in a fuzzless/lintless mutant.

Wang QQ, Liu F, Chen XS, Ma XJ, Zeng HQ, Yang ZM.

Genomics. 2010 Dec;96(6):369-76. doi: 10.1016/j.ygeno.2010.08.009.

12.

Characterizing the mouse ES cell transcriptome with Illumina sequencing.

Rosenkranz R, Borodina T, Lehrach H, Himmelbauer H.

Genomics. 2008 Oct;92(4):187-94. doi: 10.1016/j.ygeno.2008.05.011.

13.

Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies.

Hornshøj H, Bendixen E, Conley LN, Andersen PK, Hedegaard J, Panitz F, Bendixen C.

BMC Genomics. 2009 Jan 19;10:30. doi: 10.1186/1471-2164-10-30.

14.

SuperSAGE array: the direct use of 26-base-pair transcript tags in oligonucleotide arrays.

Matsumura H, Bin Nasir KH, Yoshida K, Ito A, Kahl G, Krüger DH, Terauchi R.

Nat Methods. 2006 Jun;3(6):469-74.

PMID:
16721381
15.

Differential expression in RNA-seq: a matter of depth.

Tarazona S, García-Alcalde F, Dopazo J, Ferrer A, Conesa A.

Genome Res. 2011 Dec;21(12):2213-23. doi: 10.1101/gr.124321.111.

16.

Transcript profiling reveals expression differences in wild-type and glabrous soybean lines.

Hunt M, Kaur N, Stromvik M, Vodkin L.

BMC Plant Biol. 2011 Oct 26;11:145. doi: 10.1186/1471-2229-11-145.

17.

Gene expression profiling via LongSAGE in a non-model plant species: a case study in seeds of Brassica napus.

Obermeier C, Hosseini B, Friedt W, Snowdon R.

BMC Genomics. 2009 Jul 3;10:295. doi: 10.1186/1471-2164-10-295.

18.

3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer.

Asmann YW, Klee EW, Thompson EA, Perez EA, Middha S, Oberg AL, Therneau TM, Smith DI, Poland GA, Wieben ED, Kocher JP.

BMC Genomics. 2009 Nov 16;10:531. doi: 10.1186/1471-2164-10-531.

19.

Global gene expression analysis in the bones reveals involvement of several novel genes and pathways in mediating an anabolic response of mechanical loading in mice.

Xing W, Baylink D, Kesavan C, Hu Y, Kapoor S, Chadwick RB, Mohan S.

J Cell Biochem. 2005 Dec 1;96(5):1049-60.

PMID:
16149068
20.
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