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Molecular, phylogenetic and comparative genomic analysis of the cytokinin oxidase/dehydrogenase gene family in the Poaceae.

Mameaux S, Cockram J, Thiel T, Steuernagel B, Stein N, Taudien S, Jack P, Werner P, Gray JC, Greenland AJ, Powell W.

Plant Biotechnol J. 2012 Jan;10(1):67-82. doi: 10.1111/j.1467-7652.2011.00645.x.


TaCKX6-D1, the ortholog of rice OsCKX2, is associated with grain weight in hexaploid wheat.

Zhang L, Zhao YL, Gao LF, Zhao GY, Zhou RH, Zhang BS, Jia JZ.

New Phytol. 2012 Aug;195(3):574-84. doi: 10.1111/j.1469-8137.2012.04194.x.


Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation.

Bossolini E, Wicker T, Knobel PA, Keller B.

Plant J. 2007 Feb;49(4):704-17. Erratum in: Plant J. 2007 Jun;50(6):1129.


Comparative genomics of grasses tolerant to aluminum.

Jardim SN.

Genet Mol Res. 2007 Dec 11;6(4):1178-89. Review.


Gramene, a tool for grass genomics.

Ware DH, Jaiswal P, Ni J, Yap IV, Pan X, Clark KY, Teytelman L, Schmidt SC, Zhao W, Chang K, Cartinhour S, Stein LD, McCouch SR.

Plant Physiol. 2002 Dec;130(4):1606-13. Review.


Clusters of genes encoding fructan biosynthesizing enzymes in wheat and barley.

Huynh BL, Mather DE, Schreiber AW, Toubia J, Baumann U, Shoaei Z, Stein N, Ariyadasa R, Stangoulis JC, Edwards J, Shirley N, Langridge P, Fleury D.

Plant Mol Biol. 2012 Oct;80(3):299-314. doi: 10.1007/s11103-012-9949-3.


Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS.

Fleury D, Luo MC, Dvorak J, Ramsay L, Gill BS, Anderson OD, You FM, Shoaei Z, Deal KR, Langridge P.

BMC Genomics. 2010 Jun 17;11:382. doi: 10.1186/1471-2164-11-382.


Sixty million years in evolution of soft grain trait in grasses: emergence of the softness locus in the common ancestor of Pooideae and Ehrhartoideae, after their divergence from Panicoideae.

Charles M, Tang H, Belcram H, Paterson A, Gornicki P, Chalhoub B.

Mol Biol Evol. 2009 Jul;26(7):1651-61. doi: 10.1093/molbev/msp076.


Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution.

Davidson RM, Gowda M, Moghe G, Lin H, Vaillancourt B, Shiu SH, Jiang N, Robin Buell C.

Plant J. 2012 Aug;71(3):492-502. doi: 10.1111/j.1365-313X.2012.05005.x.


Tracking the evolution of a cold stress associated gene family in cold tolerant grasses.

Sandve SR, Rudi H, Asp T, Rognli OA.

BMC Evol Biol. 2008 Sep 5;8:245. doi: 10.1186/1471-2148-8-245.


Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q.

Faris JD, Zhang Z, Fellers JP, Gill BS.

Funct Integr Genomics. 2008 May;8(2):149-64. doi: 10.1007/s10142-008-0073-z.


Cloning and mapping of a putative barley NADPH-dependent HC-toxin reductase.

Han F, Kleinhofs A, Kilian A, Ullrich SE.

Mol Plant Microbe Interact. 1997 Mar;10(2):234-9.


Lr34 multi-pathogen resistance ABC transporter: molecular analysis of homoeologous and orthologous genes in hexaploid wheat and other grass species.

Krattinger SG, Lagudah ES, Wicker T, Risk JM, Ashton AR, Selter LL, Matsumoto T, Keller B.

Plant J. 2011 Feb;65(3):392-403. doi: 10.1111/j.1365-313X.2010.04430.x.


High mature grain phytase activity in the Triticeae has evolved by duplication followed by neofunctionalization of the purple acid phosphatase phytase (PAPhy) gene.

Madsen CK, Dionisio G, Holme IB, Holm PB, Brinch-Pedersen H.

J Exp Bot. 2013 Aug;64(11):3111-23. doi: 10.1093/jxb/ert116.


Starch branching enzymes in sorghum (Sorghum bicolor) and barley (Hordeum vulgare): comparative analyses of enzyme structure and gene expression.

Mutisya J, Sathish P, Sun C, Andersson L, Ahlandsberg S, Baguma Y, Palmqvist S, Odhiambo B, Aman P, Jansson C.

J Plant Physiol. 2003 Aug;160(8):921-30.


Structural, functional, and phylogenetic characterization of a large CBF gene family in barley.

Skinner JS, von Zitzewitz J, Szucs P, Marquez-Cedillo L, Filichkin T, Amundsen K, Stockinger EJ, Thomashow MF, Chen TH, Hayes PM.

Plant Mol Biol. 2005 Nov;59(4):533-51.


Isolation and characterization of two putative cytokinin oxidase genes related to grain number per spike phenotype in wheat.

Zhang J, Liu W, Yang X, Gao A, Li X, Wu X, Li L.

Mol Biol Rep. 2011 Apr;38(4):2337-47. doi: 10.1007/s11033-010-0367-9.


A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat.

Gu YQ, Ma Y, Huo N, Vogel JP, You FM, Lazo GR, Nelson WM, Soderlund C, Dvorak J, Anderson OD, Luo MC.

BMC Genomics. 2009 Oct 27;10:496. doi: 10.1186/1471-2164-10-496.


Cytokinin oxidase/dehydrogenase genes in barley and wheat: cloning and heterologous expression.

Galuszka P, Frébortová J, Werner T, Yamada M, Strnad M, Schmülling T, Frébort I.

Eur J Biochem. 2004 Oct;271(20):3990-4002.


Contrasting evolutionary patterns of the Rp1 resistance gene family in different species of Poaceae.

Luo S, Peng J, Li K, Wang M, Kuang H.

Mol Biol Evol. 2011 Jan;28(1):313-25. doi: 10.1093/molbev/msq216.


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