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Items: 1 to 20 of 109

1.

Large-scale de novo prediction of physical protein-protein association.

Elefsinioti A, Saraç ÖS, Hegele A, Plake C, Hubner NC, Poser I, Sarov M, Hyman A, Mann M, Schroeder M, Stelzl U, Beyer A.

Mol Cell Proteomics. 2011 Nov;10(11):M111.010629. doi: 10.1074/mcp.M111.010629. Epub 2011 Aug 11.

2.

Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service.

Kim JG, Park D, Kim BC, Cho SW, Kim YT, Park YJ, Cho HJ, Park H, Kim KB, Yoon KO, Park SJ, Lee BM, Bhak J.

BMC Bioinformatics. 2008 Jan 24;9:41. doi: 10.1186/1471-2105-9-41.

3.

Probabilistic model of the human protein-protein interaction network.

Rhodes DR, Tomlins SA, Varambally S, Mahavisno V, Barrette T, Kalyana-Sundaram S, Ghosh D, Pandey A, Chinnaiyan AM.

Nat Biotechnol. 2005 Aug;23(8):951-9.

PMID:
16082366
4.

Probabilistic prediction and ranking of human protein-protein interactions.

Scott MS, Barton GJ.

BMC Bioinformatics. 2007 Jul 5;8:239.

5.

Local modeling of global interactome networks.

Scholtens D, Vidal M, Gentleman R.

Bioinformatics. 2005 Sep 1;21(17):3548-57. Epub 2005 Jul 5.

PMID:
15998662
6.

Structure-based prediction of protein-protein interactions on a genome-wide scale.

Zhang QC, Petrey D, Deng L, Qiang L, Shi Y, Thu CA, Bisikirska B, Lefebvre C, Accili D, Hunter T, Maniatis T, Califano A, Honig B.

Nature. 2012 Oct 25;490(7421):556-60. doi: 10.1038/nature11503. Epub 2012 Sep 30. Erratum in: Nature. 2013 Mar 7;495(7439):127.

7.

Topology of functional networks predicts physical binding of proteins.

Saraç OS, Pancaldi V, Bähler J, Beyer A.

Bioinformatics. 2012 Aug 15;28(16):2137-45. doi: 10.1093/bioinformatics/bts351. Epub 2012 Jun 19.

PMID:
22718785
8.

A lock-and-key model for protein-protein interactions.

Morrison JL, Breitling R, Higham DJ, Gilbert DR.

Bioinformatics. 2006 Aug 15;22(16):2012-9. Epub 2006 Jun 20.

PMID:
16787977
9.

Proteome-wide prediction of protein-protein interactions from high-throughput data.

Liu ZP, Chen L.

Protein Cell. 2012 Jul;3(7):508-20. doi: 10.1007/s13238-012-2945-1. Epub 2012 Jun 22. Review.

10.

Negative protein-protein interaction datasets derived from large-scale two-hybrid experiments.

Trabuco LG, Betts MJ, Russell RB.

Methods. 2012 Dec;58(4):343-8. doi: 10.1016/j.ymeth.2012.07.028. Epub 2012 Aug 4.

PMID:
22884951
11.

Interactome mapping for analysis of complex phenotypes: insights from benchmarking binary interaction assays.

Braun P.

Proteomics. 2012 May;12(10):1499-518. doi: 10.1002/pmic.201100598. Review.

PMID:
22589225
12.

Systematic computational prediction of protein interaction networks.

Lees JG, Heriche JK, Morilla I, Ranea JA, Orengo CA.

Phys Biol. 2011 Jun;8(3):035008. doi: 10.1088/1478-3975/8/3/035008. Epub 2011 May 13.

PMID:
21572181
13.

Interaction between intrinsically disordered proteins frequently occurs in a human protein-protein interaction network.

Shimizu K, Toh H.

J Mol Biol. 2009 Oct 9;392(5):1253-65. doi: 10.1016/j.jmb.2009.07.088. Epub 2009 Aug 3.

PMID:
19660471
14.

Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map).

Park D, Lee S, Bolser D, Schroeder M, Lappe M, Oh D, Bhak J.

Bioinformatics. 2005 Aug 1;21(15):3234-40. Epub 2005 May 24.

PMID:
15914543
15.

Identifying functional modules in the physical interactome of Saccharomyces cerevisiae.

Pu S, Vlasblom J, Emili A, Greenblatt J, Wodak SJ.

Proteomics. 2007 Mar;7(6):944-60.

PMID:
17370254
16.

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins.

Cho YR, Zhang A.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S3. doi: 10.1186/1471-2105-11-S3-S3.

17.

Predicting protein-peptide interactions via a network-based motif sampler.

Reiss DJ, Schwikowski B.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i274-82.

PMID:
15262809
18.

Binding site prediction for protein-protein interactions and novel motif discovery using re-occurring polypeptide sequences.

Amos-Binks A, Patulea C, Pitre S, Schoenrock A, Gui Y, Green JR, Golshani A, Dehne F.

BMC Bioinformatics. 2011 Jun 2;12:225. doi: 10.1186/1471-2105-12-225.

19.

Assessing the limits of genomic data integration for predicting protein networks.

Lu LJ, Xia Y, Paccanaro A, Yu H, Gerstein M.

Genome Res. 2005 Jul;15(7):945-53.

20.

A mouse protein interactome through combined literature mining with multiple sources of interaction evidence.

Li X, Cai H, Xu J, Ying S, Zhang Y.

Amino Acids. 2010 Apr;38(4):1237-52. doi: 10.1007/s00726-009-0335-7. Epub 2009 Aug 8.

PMID:
19669079

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