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Items: 1 to 20 of 100

1.

Genomic species are ecological species as revealed by comparative genomics in Agrobacterium tumefaciens.

Lassalle F, Campillo T, Vial L, Baude J, Costechareyre D, Chapulliot D, Shams M, Abrouk D, Lavire C, Oger-Desfeux C, Hommais F, Guéguen L, Daubin V, Muller D, Nesme X.

Genome Biol Evol. 2011;3:762-81. doi: 10.1093/gbe/evr070. Epub 2011 Jul 27.

2.

Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum.

Baude J, Vial L, Villard C, Campillo T, Lavire C, Nesme X, Hommais F.

Appl Environ Microbiol. 2016 May 31;82(12):3515-3524. doi: 10.1128/AEM.00419-16. Print 2016 Jun 15.

3.

Reconciliation of sequence data and updated annotation of the genome of Agrobacterium tumefaciens C58, and distribution of a linear chromosome in the genus Agrobacterium.

Slater S, Setubal JC, Goodner B, Houmiel K, Sun J, Kaul R, Goldman BS, Farrand SK, Almeida N Jr, Burr T, Nester E, Rhoads DM, Kadoi R, Ostheimer T, Pride N, Sabo A, Henry E, Telepak E, Cromes L, Harkleroad A, Oliphant L, Pratt-Szegila P, Welch R, Wood D.

Appl Environ Microbiol. 2013 Feb;79(4):1414-7. doi: 10.1128/AEM.03192-12. Epub 2012 Dec 14.

4.

Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales.

Guerrero G, Peralta H, Aguilar A, Díaz R, Villalobos MA, Medrano-Soto A, Mora J.

BMC Evol Biol. 2005 Oct 17;5:55.

5.

Theoretical prediction and experimental verification of protein-coding genes in plant pathogen genome Agrobacterium tumefaciens strain C58.

Wang Q, Lei Y, Xu X, Wang G, Chen LL.

PLoS One. 2012;7(9):e43176. doi: 10.1371/journal.pone.0043176. Epub 2012 Sep 11.

7.

Ecological speciation in bacteria: reverse ecology approaches reveal the adaptive part of bacterial cladogenesis.

Lassalle F, Muller D, Nesme X.

Res Microbiol. 2015 Dec;166(10):729-41. doi: 10.1016/j.resmic.2015.06.008. Epub 2015 Jul 17. Review.

PMID:
26192210
8.

Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid.

Ramírez-Bahena MH, Vial L, Lassalle F, Diel B, Chapulliot D, Daubin V, Nesme X, Muller D.

Mol Phylogenet Evol. 2014 Apr;73:202-7. doi: 10.1016/j.ympev.2014.01.005. Epub 2014 Jan 17.

PMID:
24440816
9.

One More Decade of Agrobacterium Taxonomy.

Gan HM, Savka MA.

Curr Top Microbiol Immunol. 2018;418:1-14. doi: 10.1007/82_2018_81. Review.

PMID:
29500562
10.

Homologous recombination in Agrobacterium: potential implications for the genomic species concept in bacteria.

Costechareyre D, Bertolla F, Nesme X.

Mol Biol Evol. 2009 Jan;26(1):167-76. doi: 10.1093/molbev/msn236. Epub 2008 Oct 20.

PMID:
18936442
11.

Combined genetic and physical map of the complex genome of Agrobacterium tumefaciens.

Goodner BW, Markelz BP, Flanagan MC, Crowell CB Jr, Racette JL, Schilling BA, Halfon LM, Mellors JS, Grabowski G.

J Bacteriol. 1999 Sep;181(17):5160-6.

12.
13.

Linear chromosome-generating system of Agrobacterium tumefaciens C58: protelomerase generates and protects hairpin ends.

Huang WM, DaGloria J, Fox H, Ruan Q, Tillou J, Shi K, Aihara H, Aron J, Casjens S.

J Biol Chem. 2012 Jul 20;287(30):25551-63. doi: 10.1074/jbc.M112.369488. Epub 2012 May 10.

14.

Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.

Goodner B, Hinkle G, Gattung S, Miller N, Blanchard M, Qurollo B, Goldman BS, Cao Y, Askenazi M, Halling C, Mullin L, Houmiel K, Gordon J, Vaudin M, Iartchouk O, Epp A, Liu F, Wollam C, Allinger M, Doughty D, Scott C, Lappas C, Markelz B, Flanagan C, Crowell C, Gurson J, Lomo C, Sear C, Strub G, Cielo C, Slater S.

Science. 2001 Dec 14;294(5550):2323-8.

15.

Identification of genomic species in Agrobacterium biovar 1 by AFLP genomic markers.

Portier P, Fischer-Le Saux M, Mougel C, Lerondelle C, Chapulliot D, Thioulouse J, Nesme X.

Appl Environ Microbiol. 2006 Nov;72(11):7123-31. Epub 2006 Aug 25.

16.

Genome sequence of the nicotine-degrading Agrobacterium tumefaciens S33.

Yu W, Li H, Xie K, Huang H, Xie H, Wang S.

J Biotechnol. 2016 Jun 20;228:1-2. doi: 10.1016/j.jbiotec.2016.04.029. Epub 2016 Apr 20.

PMID:
27106695
17.

Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains.

Peña A, Teeling H, Huerta-Cepas J, Santos F, Yarza P, Brito-Echeverría J, Lucio M, Schmitt-Kopplin P, Meseguer I, Schenowitz C, Dossat C, Barbe V, Dopazo J, Rosselló-Mora R, Schüler M, Glöckner FO, Amann R, Gabaldón T, Antón J.

ISME J. 2010 Jul;4(7):882-95. doi: 10.1038/ismej.2010.6. Epub 2010 Feb 18.

PMID:
20164864
18.

The genome of the natural genetic engineer Agrobacterium tumefaciens C58.

Wood DW, Setubal JC, Kaul R, Monks DE, Kitajima JP, Okura VK, Zhou Y, Chen L, Wood GE, Almeida NF Jr, Woo L, Chen Y, Paulsen IT, Eisen JA, Karp PD, Bovee D Sr, Chapman P, Clendenning J, Deatherage G, Gillet W, Grant C, Kutyavin T, Levy R, Li MJ, McClelland E, Palmieri A, Raymond C, Rouse G, Saenphimmachak C, Wu Z, Romero P, Gordon D, Zhang S, Yoo H, Tao Y, Biddle P, Jung M, Krespan W, Perry M, Gordon-Kamm B, Liao L, Kim S, Hendrick C, Zhao ZY, Dolan M, Chumley F, Tingey SV, Tomb JF, Gordon MP, Olson MV, Nester EW.

Science. 2001 Dec 14;294(5550):2317-23.

19.

Presence of one linear and one circular chromosome in the Agrobacterium tumefaciens C58 genome.

Allardet-Servent A, Michaux-Charachon S, Jumas-Bilak E, Karayan L, Ramuz M.

J Bacteriol. 1993 Dec;175(24):7869-74.

20.

Unique core genomes of the bacterial family vibrionaceae: insights into niche adaptation and speciation.

Kahlke T, Goesmann A, Hjerde E, Willassen NP, Haugen P.

BMC Genomics. 2012 May 10;13:179. doi: 10.1186/1471-2164-13-179.

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