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Items: 1 to 20 of 226

1.

Systems biology of tomato fruit development: combined transcript, protein, and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions.

Osorio S, Alba R, Damasceno CM, Lopez-Casado G, Lohse M, Zanor MI, Tohge T, Usadel B, Rose JK, Fei Z, Giovannoni JJ, Fernie AR.

Plant Physiol. 2011 Sep;157(1):405-25. doi: 10.1104/pp.111.175463. Epub 2011 Jul 27.

2.

MicroRNA profiling analysis throughout tomato fruit development and ripening reveals potential regulatory role of RIN on microRNAs accumulation.

Gao C, Ju Z, Cao D, Zhai B, Qin G, Zhu H, Fu D, Luo Y, Zhu B.

Plant Biotechnol J. 2015 Apr;13(3):370-82. doi: 10.1111/pbi.12297. Epub 2014 Dec 16.

3.

A large-scale identification of direct targets of the tomato MADS box transcription factor RIPENING INHIBITOR reveals the regulation of fruit ripening.

Fujisawa M, Nakano T, Shima Y, Ito Y.

Plant Cell. 2013 Feb;25(2):371-86. doi: 10.1105/tpc.112.108118. Epub 2013 Feb 5.

4.

Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior.

Carrari F, Baxter C, Usadel B, Urbanczyk-Wochniak E, Zanor MI, Nunes-Nesi A, Nikiforova V, Centero D, Ratzka A, Pauly M, Sweetlove LJ, Fernie AR.

Plant Physiol. 2006 Dec;142(4):1380-96. Epub 2006 Oct 27.

5.
6.

Comprehensive Profiling of Ethylene Response Factor Expression Identifies Ripening-Associated ERF Genes and Their Link to Key Regulators of Fruit Ripening in Tomato.

Liu M, Gomes BL, Mila I, Purgatto E, Peres LE, Frasse P, Maza E, Zouine M, Roustan JP, Bouzayen M, Pirrello J.

Plant Physiol. 2016 Mar;170(3):1732-44. doi: 10.1104/pp.15.01859. Epub 2016 Jan 6.

7.

Fruit ripening mutants reveal cell metabolism and redox state during ripening.

Kumar V, Irfan M, Ghosh S, Chakraborty N, Chakraborty S, Datta A.

Protoplasma. 2016 Mar;253(2):581-94. doi: 10.1007/s00709-015-0836-z. Epub 2015 May 26.

PMID:
26008650
8.

A new tomato NAC (NAM/ATAF1/2/CUC2) transcription factor, SlNAC4, functions as a positive regulator of fruit ripening and carotenoid accumulation.

Zhu M, Chen G, Zhou S, Tu Y, Wang Y, Dong T, Hu Z.

Plant Cell Physiol. 2014 Jan;55(1):119-35. doi: 10.1093/pcp/pct162. Epub 2013 Nov 20.

PMID:
24265273
9.

Direct targets of the tomato-ripening regulator RIN identified by transcriptome and chromatin immunoprecipitation analyses.

Fujisawa M, Shima Y, Higuchi N, Nakano T, Koyama Y, Kasumi T, Ito Y.

Planta. 2012 Jun;235(6):1107-22. doi: 10.1007/s00425-011-1561-2. Epub 2011 Dec 9.

PMID:
22160566
10.

The tomato FRUITFULL homologs TDR4/FUL1 and MBP7/FUL2 regulate ethylene-independent aspects of fruit ripening.

Bemer M, Karlova R, Ballester AR, Tikunov YM, Bovy AG, Wolters-Arts M, Rossetto Pde B, Angenent GC, de Maagd RA.

Plant Cell. 2012 Nov;24(11):4437-51. doi: 10.1105/tpc.112.103283. Epub 2012 Nov 6.

11.

Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening.

Karlova R, Rosin FM, Busscher-Lange J, Parapunova V, Do PT, Fernie AR, Fraser PD, Baxter C, Angenent GC, de Maagd RA.

Plant Cell. 2011 Mar;23(3):923-41. doi: 10.1105/tpc.110.081273. Epub 2011 Mar 11.

12.

Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development.

Alba R, Payton P, Fei Z, McQuinn R, Debbie P, Martin GB, Tanksley SD, Giovannoni JJ.

Plant Cell. 2005 Nov;17(11):2954-65. Epub 2005 Oct 21.

13.

Ripening-regulated susceptibility of tomato fruit to Botrytis cinerea requires NOR but not RIN or ethylene.

Cantu D, Blanco-Ulate B, Yang L, Labavitch JM, Bennett AB, Powell AL.

Plant Physiol. 2009 Jul;150(3):1434-49. doi: 10.1104/pp.109.138701. Epub 2009 May 22.

14.

Use of genomics tools to isolate key ripening genes and analyse fruit maturation in tomato.

Moore S, Vrebalov J, Payton P, Giovannoni J.

J Exp Bot. 2002 Oct;53(377):2023-30. Review.

PMID:
12324526
15.

Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation.

Lee JM, Joung JG, McQuinn R, Chung MY, Fei Z, Tieman D, Klee H, Giovannoni J.

Plant J. 2012 Apr;70(2):191-204. doi: 10.1111/j.1365-313X.2011.04863.x. Epub 2012 Jan 5.

16.

Integrative comparative analyses of transcript and metabolite profiles from pepper and tomato ripening and development stages uncovers species-specific patterns of network regulatory behavior.

Osorio S, Alba R, Nikoloski Z, Kochevenko A, Fernie AR, Giovannoni JJ.

Plant Physiol. 2012 Aug;159(4):1713-29. doi: 10.1104/pp.112.199711. Epub 2012 Jun 8.

17.
18.

Use of homologous and heterologous gene expression profiling tools to characterize transcription dynamics during apple fruit maturation and ripening.

Costa F, Alba R, Schouten H, Soglio V, Gianfranceschi L, Serra S, Musacchi S, Sansavini S, Costa G, Fei Z, Giovannoni J.

BMC Plant Biol. 2010 Oct 25;10:229. doi: 10.1186/1471-2229-10-229.

19.

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening.

Chung MY, Vrebalov J, Alba R, Lee J, McQuinn R, Chung JD, Klein P, Giovannoni J.

Plant J. 2010 Dec;64(6):936-47. doi: 10.1111/j.1365-313X.2010.04384.x. Epub 2010 Nov 17.

20.

Unraveling the target genes of RIN transcription factor during tomato fruit ripening and softening.

Li L, Wang X, Zhang X, Guo M, Liu T.

J Sci Food Agric. 2017 Feb;97(3):991-1000. doi: 10.1002/jsfa.7825. Epub 2016 Jun 21.

PMID:
27247090

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