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Items: 1 to 20 of 85

1.

VISTA Region Viewer (RViewer)--a computational system for prioritizing genomic intervals for biomedical studies.

Lukashin I, Novichkov P, Boffelli D, Paciorkowski AR, Minovitsky S, Yang S, Dubchak I.

Bioinformatics. 2011 Sep 15;27(18):2595-7. doi: 10.1093/bioinformatics/btr440. Epub 2011 Jul 26.

2.

Multiple whole genome alignments and novel biomedical applications at the VISTA portal.

Brudno M, Poliakov A, Minovitsky S, Ratnere I, Dubchak I.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W669-74. Epub 2007 May 8.

3.

GenomeVISTA--an integrated software package for whole-genome alignment and visualization.

Poliakov A, Foong J, Brudno M, Dubchak I.

Bioinformatics. 2014 Sep 15;30(18):2654-5. doi: 10.1093/bioinformatics/btu355. Epub 2014 May 23.

4.

TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities.

Gu S, Anderson I, Kunin V, Cipriano M, Minovitsky S, Weber G, Amenta N, Hamann B, Dubchak I.

Bioinformatics. 2007 Mar 15;23(6):764-6. Epub 2007 Jan 17.

PMID:
17234642
5.

AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations.

Vuong H, Stephens RM, Volfovsky N.

Bioinformatics. 2014 Apr 1;30(7):1013-4. doi: 10.1093/bioinformatics/btt655. Epub 2013 Nov 9.

6.
7.

CNVannotator: a comprehensive annotation server for copy number variation in the human genome.

Zhao M, Zhao Z.

PLoS One. 2013 Nov 14;8(11):e80170. doi: 10.1371/journal.pone.0080170. eCollection 2013.

8.

SNP-VISTA: an interactive SNP visualization tool.

Shah N, Teplitsky MV, Minovitsky S, Pennacchio LA, Hugenholtz P, Hamann B, Dubchak IL.

BMC Bioinformatics. 2005 Dec 8;6:292.

9.

SynTView - an interactive multi-view genome browser for next-generation comparative microorganism genomics.

Lechat P, Souche E, Moszer I.

BMC Bioinformatics. 2013 Sep 22;14:277. doi: 10.1186/1471-2105-14-277.

10.

CNVineta: a data mining tool for large case-control copy number variation datasets.

Wittig M, Helbig I, Schreiber S, Franke A.

Bioinformatics. 2010 Sep 1;26(17):2208-9. doi: 10.1093/bioinformatics/btq356. Epub 2010 Jul 6.

11.

CGAS: comparative genomic analysis server.

Itoh M, Watanabe H.

Bioinformatics. 2009 Apr 1;25(7):958-9. doi: 10.1093/bioinformatics/btp086. Epub 2009 Feb 13.

12.

GenomeCons: a web server for manipulating multiple genome sequence alignments and their consensus sequences.

Sato T, Suyama M.

Bioinformatics. 2015 Apr 15;31(8):1293-5. doi: 10.1093/bioinformatics/btu803. Epub 2014 Dec 4.

PMID:
25480378
13.

A web-based image viewer for multiple PET-CT follow-up studies.

Haraguchi D, Kim J, Kumar A, Constantinescu L, Wen L, Feng DD.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:5279-82. doi: 10.1109/IEMBS.2011.6091306.

PMID:
22255529
14.

ChroMoS: an integrated web tool for SNP classification, prioritization and functional interpretation.

Barenboim M, Manke T.

Bioinformatics. 2013 Sep 1;29(17):2197-8. doi: 10.1093/bioinformatics/btt356. Epub 2013 Jun 19.

15.

Prioritizing disease-linked variants, genes, and pathways with an interactive whole-genome analysis pipeline.

Lee IH, Lee K, Hsing M, Choe Y, Park JH, Kim SH, Bohn JM, Neu MB, Hwang KB, Green RC, Kohane IS, Kong SW.

Hum Mutat. 2014 May;35(5):537-47. doi: 10.1002/humu.22520. Epub 2014 Mar 6.

16.

Obtaining comparative genomic data with the VISTA family of computational tools.

Ratnere I, Dubchak I.

Curr Protoc Bioinformatics. 2009 Jun;Chapter 10:Unit 10.6. doi: 10.1002/0471250953.bi1006s26.

PMID:
19496056
18.

Comparative analysis and visualization of multiple collinear genomes.

Wang JR, de Villena FP, McMillan L.

BMC Bioinformatics. 2012 Mar 21;13 Suppl 3:S13. doi: 10.1186/1471-2105-13-S3-S13.

19.

BioC viewer: a web-based tool for displaying and merging annotations in BioC.

Shin SY, Kim S, Wilbur WJ, Kwon D.

Database (Oxford). 2016 Aug 10;2016. pii: baw106. doi: 10.1093/database/baw106. Print 2016.

20.

CNVVdb: a database of copy number variations across vertebrate genomes.

Chen FC, Chen YZ, Chuang TJ.

Bioinformatics. 2009 Jun 1;25(11):1419-21. doi: 10.1093/bioinformatics/btp166. Epub 2009 Mar 25.

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