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Items: 1 to 20 of 185


Bayesian semi-supervised classification of bacterial samples using MLST databases.

Cheng L, Connor TR, Aanensen DM, Spratt BG, Corander J.

BMC Bioinformatics. 2011 Jul 26;12:302. doi: 10.1186/1471-2105-12-302.


Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations.

Corander J, Marttinen P, Sirén J, Tang J.

BMC Bioinformatics. 2008 Dec 16;9:539. doi: 10.1186/1471-2105-9-539.


Short read sequence typing (SRST): multi-locus sequence types from short reads.

Inouye M, Conway TC, Zobel J, Holt KE.

BMC Genomics. 2012 Jul 24;13:338.


Database-driven multi locus sequence typing (MLST) of bacterial pathogens.

Chan MS, Maiden MC, Spratt BG.

Bioinformatics. 2001 Nov;17(11):1077-83.


The multilocus sequence typing network:

Aanensen DM, Spratt BG.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W728-33.


Bayesian modeling of recombination events in bacterial populations.

Marttinen P, Baldwin A, Hanage WP, Dowson C, Mahenthiralingam E, Corander J.

BMC Bioinformatics. 2008 Oct 7;9:421. doi: 10.1186/1471-2105-9-421.


Identifying currents in the gene pool for bacterial populations using an integrative approach.

Tang J, Hanage WP, Fraser C, Corander J.

PLoS Comput Biol. 2009 Aug;5(8):e1000455. doi: 10.1371/journal.pcbi.1000455. Epub 2009 Aug 7.


MLSTest: novel software for multi-locus sequence data analysis in eukaryotic organisms.

Tomasini N, Lauthier JJ, Llewellyn MS, Diosque P.

Infect Genet Evol. 2013 Dec;20:188-96. doi: 10.1016/j.meegid.2013.08.029. Epub 2013 Sep 8.


Multilocus sequence typing of total-genome-sequenced bacteria.

Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H, Marvig RL, Jelsbak L, Sicheritz-Pontén T, Ussery DW, Aarestrup FM, Lund O.

J Clin Microbiol. 2012 Apr;50(4):1355-61. doi: 10.1128/JCM.06094-11. Epub 2012 Jan 11.


mlstdbNet - distributed multi-locus sequence typing (MLST) databases.

Jolley KA, Chan MS, Maiden MC.

BMC Bioinformatics. 2004 Jul 1;5:86.


Cronobacter, the emergent bacterial pathogen Enterobacter sakazakii comes of age; MLST and whole genome sequence analysis.

Forsythe SJ, Dickins B, Jolley KA.

BMC Genomics. 2014 Dec 16;15:1121. doi: 10.1186/1471-2164-15-1121.


Bayesian clustering and feature selection for cancer tissue samples.

Marttinen P, Myllykangas S, Corander J.

BMC Bioinformatics. 2009 Mar 18;10:90. doi: 10.1186/1471-2105-10-90.


BacWGSTdb, a database for genotyping and source tracking bacterial pathogens.

Ruan Z, Feng Y.

Nucleic Acids Res. 2016 Jan 4;44(D1):D682-7. doi: 10.1093/nar/gkv1004. Epub 2015 Oct 3.


BIGSdb: Scalable analysis of bacterial genome variation at the population level.

Jolley KA, Maiden MC.

BMC Bioinformatics. 2010 Dec 10;11:595. doi: 10.1186/1471-2105-11-595.


MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples.

Zolfo M, Tett A, Jousson O, Donati C, Segata N.

Nucleic Acids Res. 2017 Jan 25;45(2):e7. doi: 10.1093/nar/gkw837. Epub 2016 Sep 19.


Software for selecting the most informative sets of genomic loci for multi-target microbial typing.

O'Sullivan MV, Sintchenko V, Gilbert GL.

BMC Bioinformatics. 2013 May 1;14:148. doi: 10.1186/1471-2105-14-148.


Online tools for polyphasic analysis of Mycobacterium tuberculosis complex genotyping data: now and next.

Weniger T, Krawczyk J, Supply P, Harmsen D, Niemann S.

Infect Genet Evol. 2012 Jun;12(4):748-54. doi: 10.1016/j.meegid.2012.01.021. Epub 2012 Feb 10.


Multilocus sequence typing.

Enright MC, Spratt BG.

Trends Microbiol. 1999 Dec;7(12):482-7. Review.


Epidemiological tracking and population assignment of the non-clonal bacterium, Burkholderia pseudomallei.

Dale J, Price EP, Hornstra H, Busch JD, Mayo M, Godoy D, Wuthiekanun V, Baker A, Foster JT, Wagner DM, Tuanyok A, Warner J, Spratt BG, Peacock SJ, Currie BJ, Keim P, Pearson T.

PLoS Negl Trop Dis. 2011 Dec;5(12):e1381. doi: 10.1371/journal.pntd.0001381. Epub 2011 Dec 13.


MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

BMC Bioinformatics. 2006 Oct 17;7:459.

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