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Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing.

Haag JR, Pikaard CS.

Nat Rev Mol Cell Biol. 2011 Jul 22;12(8):483-92. doi: 10.1038/nrm3152. Review.


NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation.

He XJ, Hsu YF, Pontes O, Zhu J, Lu J, Bressan RA, Pikaard C, Wang CS, Zhu JK.

Genes Dev. 2009 Feb 1;23(3):318-30. doi: 10.1101/gad.1765209.


Metal A and metal B sites of nuclear RNA polymerases Pol IV and Pol V are required for siRNA-dependent DNA methylation and gene silencing.

Haag JR, Pontes O, Pikaard CS.

PLoS One. 2009;4(1):e4110. doi: 10.1371/journal.pone.0004110. Epub 2009 Jan 1.


Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II.

Ream TS, Haag JR, Wierzbicki AT, Nicora CD, Norbeck AD, Zhu JK, Hagen G, Guilfoyle TJ, Pasa-Tolić L, Pikaard CS.

Mol Cell. 2009 Jan 30;33(2):192-203. doi: 10.1016/j.molcel.2008.12.015. Epub 2008 Dec 24.


RNA-directed DNA methylation and plant development require an IWR1-type transcription factor.

Kanno T, Bucher E, Daxinger L, Huettel B, Kreil DP, Breinig F, Lind M, Schmitt MJ, Simon SA, Gurazada SG, Meyers BC, Lorkovic ZJ, Matzke AJ, Matzke M.

EMBO Rep. 2010 Jan;11(1):65-71. doi: 10.1038/embor.2009.246. Epub 2009 Dec 11.


Functional consequences of subunit diversity in RNA polymerases II and V.

Tan EH, Blevins T, Ream TS, Pikaard CS.

Cell Rep. 2012 Mar 29;1(3):208-14.


RNA polymerase IV directs silencing of endogenous DNA.

Herr AJ, Jensen MB, Dalmay T, Baulcombe DC.

Science. 2005 Apr 1;308(5718):118-20. Epub 2005 Feb 3.


Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.

Pontier D, Yahubyan G, Vega D, Bulski A, Saez-Vasquez J, Hakimi MA, Lerbs-Mache S, Colot V, Lagrange T.

Genes Dev. 2005 Sep 1;19(17):2030-40.


Evolutionary history of plant multisubunit RNA polymerases IV and V: subunit origins via genome-wide and segmental gene duplications, retrotransposition, and lineage-specific subfunctionalization.

Tucker SL, Reece J, Ream TS, Pikaard CS.

Cold Spring Harb Symp Quant Biol. 2010;75:285-97. doi: 10.1101/sqb.2010.75.037. Epub 2011 Mar 29.


The RNA silencing enzyme RNA polymerase v is required for plant immunity.

López A, Ramírez V, García-Andrade J, Flors V, Vera P.

PLoS Genet. 2011 Dec;7(12):e1002434. doi: 10.1371/journal.pgen.1002434. Epub 2011 Dec 29.


A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing.

Zhu Y, Rowley MJ, Böhmdorfer G, Wierzbicki AT.

Mol Cell. 2013 Jan 24;49(2):298-309. doi: 10.1016/j.molcel.2012.11.011. Epub 2012 Dec 13.


A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development.

He XJ, Hsu YF, Zhu S, Liu HL, Pontes O, Zhu J, Cui X, Wang CS, Zhu JK.

Genes Dev. 2009 Dec 1;23(23):2717-22. doi: 10.1101/gad.1851809. Epub 2009 Nov 10.


RNA-directed DNA methylation and Pol IVb in Arabidopsis.

Matzke M, Kanno T, Huettel B, Daxinger L, Matzke AJ.

Cold Spring Harb Symp Quant Biol. 2006;71:449-59. Review.


Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana.

You W, Tyczewska A, Spencer M, Daxinger L, Schmid MW, Grossniklaus U, Simon SA, Meyers BC, Matzke AJ, Matzke M.

BMC Plant Biol. 2012 Apr 19;12:51. doi: 10.1186/1471-2229-12-51.


A Pol V-mediated silencing, independent of RNA-directed DNA methylation, applies to 5S rDNA.

Douet J, Tutois S, Tourmente S.

PLoS Genet. 2009 Oct;5(10):e1000690. doi: 10.1371/journal.pgen.1000690. Epub 2009 Oct 16.


In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing.

Haag JR, Ream TS, Marasco M, Nicora CD, Norbeck AD, Pasa-Tolic L, Pikaard CS.

Mol Cell. 2012 Dec 14;48(5):811-8. doi: 10.1016/j.molcel.2012.09.027. Epub 2012 Nov 8.


Atypical RNA polymerase subunits required for RNA-directed DNA methylation.

Kanno T, Huettel B, Mette MF, Aufsatz W, Jaligot E, Daxinger L, Kreil DP, Matzke M, Matzke AJ.

Nat Genet. 2005 Jul;37(7):761-5. Epub 2005 May 29.


Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components.

El-Shami M, Pontier D, Lahmy S, Braun L, Picart C, Vega D, Hakimi MA, Jacobsen SE, Cooke R, Lagrange T.

Genes Dev. 2007 Oct 15;21(20):2539-44.


RNA polymerase IV and transcriptional silencing.

Vaucheret H.

Nat Genet. 2005 Jul;37(7):659-60. No abstract available.

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