Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 98

1.

Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters.

Koch F, Fenouil R, Gut M, Cauchy P, Albert TK, Zacarias-Cabeza J, Spicuglia S, de la Chapelle AL, Heidemann M, Hintermair C, Eick D, Gut I, Ferrier P, Andrau JC.

Nat Struct Mol Biol. 2011 Jul 17;18(8):956-63. doi: 10.1038/nsmb.2085.

PMID:
21765417
2.

The role of enhancers as centres for general transcription factor recruitment.

Szutorisz H, Dillon N, Tora L.

Trends Biochem Sci. 2005 Nov;30(11):593-9. Epub 2005 Aug 29. Review.

PMID:
16126390
3.

RNA polymerase II transcription: structure and mechanism.

Liu X, Bushnell DA, Kornberg RD.

Biochim Biophys Acta. 2013 Jan;1829(1):2-8. doi: 10.1016/j.bbagrm.2012.09.003. Epub 2012 Sep 18. Review.

4.

The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures.

Chen RA, Down TA, Stempor P, Chen QB, Egelhofer TA, Hillier LW, Jeffers TE, Ahringer J.

Genome Res. 2013 Aug;23(8):1339-47. doi: 10.1101/gr.153668.112. Epub 2013 Apr 2.

5.

Structural basis of transcription initiation by RNA polymerase II.

Sainsbury S, Bernecky C, Cramer P.

Nat Rev Mol Cell Biol. 2015 Mar;16(3):129-43. doi: 10.1038/nrm3952. Epub 2015 Feb 18. Review.

PMID:
25693126
6.

The RNA polymerase II preinitiation complex. Through what pathway is the complex assembled?

Luse DS.

Transcription. 2014;5(1):e27050. doi: 10.4161/trns.27050. Review.

7.

Genome-wide structure and organization of eukaryotic pre-initiation complexes.

Rhee HS, Pugh BF.

Nature. 2012 Jan 18;483(7389):295-301. doi: 10.1038/nature10799. Erratum in: Nature. 2012 Jul 5;487(7405):128.

8.

Initiating RNA polymerase II and TIPs as hallmarks of enhancer activity and tissue-specificity.

Koch F, Andrau JC.

Transcription. 2011 Nov-Dec;2(6):263-8. doi: 10.4161/trns.2.6.18747. Epub 2011 Nov 1.

9.

Comparative TFIIS-mediated transcript cleavage by mammalian RNA polymerase II arrested at a lesion in different transcription systems.

Kalogeraki VS, Tornaletti S, Cooper PK, Hanawalt PC.

DNA Repair (Amst). 2005 Sep 28;4(10):1075-87.

PMID:
16046193
10.

RNA polymerase II and TAFs undergo a slow isomerization after the polymerase is recruited to promoter-bound TFIID.

Yakovchuk P, Gilman B, Goodrich JA, Kugel JF.

J Mol Biol. 2010 Mar 19;397(1):57-68. doi: 10.1016/j.jmb.2010.01.025. Epub 2010 Jan 18.

PMID:
20083121
11.

Architecture of an RNA polymerase II transcription pre-initiation complex.

Murakami K, Elmlund H, Kalisman N, Bushnell DA, Adams CM, Azubel M, Elmlund D, Levi-Kalisman Y, Liu X, Gibbons BJ, Levitt M, Kornberg RD.

Science. 2013 Nov 8;342(6159):1238724. doi: 10.1126/science.1238724. Epub 2013 Sep 26.

12.

Clusters of regulatory signals for RNA polymerase II transcription associated with Alu family repeats and CpG islands in human promoters.

Oei SL, Babich VS, Kazakov VI, Usmanova NM, Kropotov AV, Tomilin NV.

Genomics. 2004 May;83(5):873-82.

PMID:
15081116
13.

More pieces to the puzzle: recent structural insights into class II transcription initiation.

Kandiah E, Trowitzsch S, Gupta K, Haffke M, Berger I.

Curr Opin Struct Biol. 2014 Feb;24:91-7. doi: 10.1016/j.sbi.2013.12.005. Epub 2014 Jan 16. Review.

PMID:
24440461
14.

Regulation of alternative splicing by a transcriptional enhancer through RNA pol II elongation.

Kadener S, Fededa JP, Rosbash M, Kornblihtt AR.

Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):8185-90.

15.

Identification of active transcriptional regulatory modules by the functional assay of DNA from nucleosome-free regions.

Yaragatti M, Basilico C, Dailey L.

Genome Res. 2008 Jun;18(6):930-8. doi: 10.1101/gr.073460.107. Epub 2008 Apr 25.

16.

GC skew defines distinct RNA polymerase pause sites in CpG island promoters.

Kellner WA, Bell JS, Vertino PM.

Genome Res. 2015 Nov;25(11):1600-9. doi: 10.1101/gr.189068.114. Epub 2015 Aug 14.

17.

Mediator-regulated transcription through the +1 nucleosome.

Nock A, Ascano JM, Barrero MJ, Malik S.

Mol Cell. 2012 Dec 28;48(6):837-48. doi: 10.1016/j.molcel.2012.10.009. Epub 2012 Nov 15.

18.

Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells.

Descostes N, Heidemann M, Spinelli L, Schüller R, Maqbool MA, Fenouil R, Koch F, Innocenti C, Gut M, Gut I, Eick D, Andrau JC.

Elife. 2014 May 9;3:e02105. doi: 10.7554/eLife.02105.

19.
20.

Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.

Zhang Y, Wong CH, Birnbaum RY, Li G, Favaro R, Ngan CY, Lim J, Tai E, Poh HM, Wong E, Mulawadi FH, Sung WK, Nicolis S, Ahituv N, Ruan Y, Wei CL.

Nature. 2013 Dec 12;504(7479):306-10. doi: 10.1038/nature12716. Epub 2013 Nov 10.

Supplemental Content

Support Center