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Items: 1 to 20 of 94

1.

Theoretical assessment of the oligolysine model for ionic interactions in protein-DNA complexes.

Fenley MO, Russo C, Manning GS.

J Phys Chem B. 2011 Aug 18;115(32):9864-72. doi: 10.1021/jp204915y. Epub 2011 Jul 26.

2.

Counterion condensation theory of attraction between like charges in the absence of multivalent counterions.

Manning GS.

Eur Phys J E Soft Matter. 2011 Dec;34(12):1-18. doi: 10.1140/epje/i2011-11132-6. Epub 2011 Dec 23.

PMID:
22197905
3.

Monte Carlo and Poisson-Boltzmann calculations of the fraction of counterions bound to DNA.

Lamm G, Wong L, Pack GR.

Biopolymers. 1994 Feb;34(2):227-37.

PMID:
8142591
4.

Salt effects on ligand-DNA binding. Minor groove binding antibiotics.

Misra VK, Sharp KA, Friedman RA, Honig B.

J Mol Biol. 1994 Apr 29;238(2):245-63.

PMID:
7512653
5.

The contribution of transient counterion imbalances to DNA bending fluctuations.

Manning GS.

Biophys J. 2006 May 1;90(9):3208-15. Epub 2006 Feb 3. Review.

6.

Electrostatic free energy of the DNA double helix in counterion condensation theory.

Manning GS.

Biophys Chem. 2002 Dec 10;101-102:461-73.

PMID:
12488020
7.

Salt effects on polyelectrolyte-ligand binding: comparison of Poisson-Boltzmann, and limiting law/counterion binding models.

Sharp KA, Friedman RA, Misra V, Hecht J, Honig B.

Biopolymers. 1995 Aug;36(2):245-62.

PMID:
7492748
8.

Approach to the limit of counterion condensation.

Fenley MO, Manning GS, Olson WK.

Biopolymers. 1990;30(13-14):1191-203.

PMID:
2085657
9.
10.

Revisiting the association of cationic groove-binding drugs to DNA using a Poisson-Boltzmann approach.

Fenley MO, Harris RC, Jayaram B, Boschitsch AH.

Biophys J. 2010 Aug 4;99(3):879-86. doi: 10.1016/j.bpj.2010.04.066.

11.

Counterion condensation and shape within Poisson-Boltzmann theory.

Lamm G, Pack GR.

Biopolymers. 2010 Jul;93(7):619-39. doi: 10.1002/bip.21421. Review.

PMID:
20213767
12.

Brownian dynamics of double-stranded DNA in periodic systems with discrete salt.

Mielke SP, Grønbech-Jensen N, Benham CJ.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Mar;77(3 Pt 1):031924. Epub 2008 Mar 31.

PMID:
18517439
13.
14.

A counterion condensation theory for the relaxation, rise, and frequency dependence of the parallel polarization of rodlike polyelectrolytes.

Manning GS.

Eur Phys J E Soft Matter. 2011 Apr;34(4):39. doi: 10.1140/epje/i2011-11039-2. Epub 2011 Apr 19.

PMID:
21499964
15.

Charge structure and counterion distribution in hexagonal DNA liquid crystal.

Dai L, Mu Y, Nordenskiöld L, Lapp A, van der Maarel JR.

Biophys J. 2007 Feb 1;92(3):947-58. Epub 2006 Nov 10.

16.

Electrostatic contributions to the binding free energy of the lambdacI repressor to DNA.

Misra VK, Hecht JL, Yang AS, Honig B.

Biophys J. 1998 Nov;75(5):2262-73.

17.

The electrostatic contribution to the B to Z transition of DNA.

Misra VK, Honig B.

Biochemistry. 1996 Jan 30;35(4):1115-24.

PMID:
8573566
18.
19.

Poisson-Boltzmann calculations of nonspecific salt effects on protein-protein binding free energies.

Bertonati C, Honig B, Alexov E.

Biophys J. 2007 Mar 15;92(6):1891-9. Epub 2007 Jan 5.

20.

Competitive adsorption of model charged proteins: the effect of total charge and charge distribution.

Gong P, Szleifer I.

J Colloid Interface Sci. 2004 Oct 1;278(1):81-90.

PMID:
15313640

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