Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 149

1.

Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples.

Cheval J, Sauvage V, Frangeul L, Dacheux L, Guigon G, Dumey N, Pariente K, Rousseaux C, Dorange F, Berthet N, Brisse S, Moszer I, Bourhy H, Manuguerra CJ, Lecuit M, Burguiere A, Caro V, Eloit M.

J Clin Microbiol. 2011 Sep;49(9):3268-75. doi: 10.1128/JCM.00850-11. Epub 2011 Jun 29.

2.

Cataloguing the taxonomic origins of sequences from a heterogeneous sample using phylogenomics: applications in adventitious agent detection.

Charlebois RL, Ng SH, Gisonni-Lex L, Mallet L.

PDA J Pharm Sci Technol. 2014 Nov-Dec;68(6):602-18. doi: 10.5731/pdajpst.2014.01023.

PMID:
25475635
3.

A fast and robust method for full genome sequencing of Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Type 1 and Type 2.

Kvisgaard LK, Hjulsager CK, Fahnøe U, Breum SØ, Ait-Ali T, Larsen LE.

J Virol Methods. 2013 Nov;193(2):697-705. doi: 10.1016/j.jviromet.2013.07.019. Epub 2013 Jul 24.

4.

Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis.

Briese T, Kapoor A, Mishra N, Jain K, Kumar A, Jabado OJ, Lipkin WI.

MBio. 2015 Sep 22;6(5):e01491-15. doi: 10.1128/mBio.01491-15. Erratum in: MBio. 2017 May 16;8(3):.

5.

Comparing Viral Metagenomic Extraction Methods.

Klenner J, Kohl C, Dabrowski PW, Nitsche A.

Curr Issues Mol Biol. 2017;24:59-70. doi: 10.21775/cimb.024.059. Epub 2017 Jul 6.

PMID:
28686568
6.

Whole genome: next-generation sequencing as a virus safety test for biotechnological products.

Cabannes E, Hébert C, Eloit M.

PDA J Pharm Sci Technol. 2014 Nov-Dec;68(6):631-8. doi: 10.5731/pdajpst.2014.01015.

PMID:
25475638
7.

Simultaneous rapid sequencing of multiple RNA virus genomes.

Neill JD, Bayles DO, Ridpath JF.

J Virol Methods. 2014 Jun;201:68-72. doi: 10.1016/j.jviromet.2014.02.016. Epub 2014 Feb 28.

8.

Comprehensive detection of viruses in pediatric patients with acute liver failure using next-generation sequencing.

Suzuki T, Kawada JI, Okuno Y, Hayano S, Horiba K, Torii Y, Takahashi Y, Umetsu S, Sogo T, Inui A, Ito Y.

J Clin Virol. 2017 Nov;96:67-72. doi: 10.1016/j.jcv.2017.10.001. Epub 2017 Oct 3.

PMID:
28992518
9.

Viral detection by high-throughput sequencing.

Motooka D, Nakamura S, Hagiwara K, Nakaya T.

Methods Mol Biol. 2015;1236:125-34. doi: 10.1007/978-1-4939-1743-3_11.

PMID:
25287501
10.

Defining a sample preparation workflow for advanced virus detection and understanding sensitivity by next-generation sequencing.

Wang CJ, Feng SF, Duncan P.

PDA J Pharm Sci Technol. 2014 Nov-Dec;68(6):579-88. doi: 10.5731/pdajpst.2014.01010.

PMID:
25475632
11.

VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs.

Zheng Y, Gao S, Padmanabhan C, Li R, Galvez M, Gutierrez D, Fuentes S, Ling KS, Kreuze J, Fei Z.

Virology. 2017 Jan;500:130-138. doi: 10.1016/j.virol.2016.10.017. Epub 2016 Nov 5.

12.

A practical approach to a viral detection pipeline using existing viral and non-viral sequence resources.

Bekkari K, Shpungin J, Thompson JR.

PDA J Pharm Sci Technol. 2014 Nov-Dec;68(6):595-601. doi: 10.5731/pdajpst.2014.01022.

PMID:
25475634
13.

A robust and cost-effective approach to sequence and analyze complete genomes of small RNA viruses.

Dimitrov KM, Sharma P, Volkening JD, Goraichuk IV, Wajid A, Rehmani SF, Basharat A, Shittu I, Joannis TM, Miller PJ, Afonso CL.

Virol J. 2017 Apr 7;14(1):72. doi: 10.1186/s12985-017-0741-5.

14.

A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples.

Batty EM, Wong TH, Trebes A, Argoud K, Attar M, Buck D, Ip CL, Golubchik T, Cule M, Bowden R, Manganis C, Klenerman P, Barnes E, Walker AS, Wyllie DH, Wilson DJ, Dingle KE, Peto TE, Crook DW, Piazza P.

PLoS One. 2013 Jun 10;8(6):e66129. doi: 10.1371/journal.pone.0066129. Print 2013.

15.

Parallel evaluation of broad virus detection methods.

Modrof J, Berting A, Kreil TR.

PDA J Pharm Sci Technol. 2014 Nov-Dec;68(6):572-8. doi: 10.5731/pdajpst.2014.01014.

PMID:
25475631
16.

Single-tube multiplexed molecular detection of endemic porcine viruses in combination with background screening for transboundary diseases.

Wernike K, Hoffmann B, Beer M.

J Clin Microbiol. 2013 Mar;51(3):938-44. doi: 10.1128/JCM.02947-12. Epub 2013 Jan 9.

17.

Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood.

Frey KG, Herrera-Galeano JE, Redden CL, Luu TV, Servetas SL, Mateczun AJ, Mokashi VP, Bishop-Lilly KA.

BMC Genomics. 2014 Feb 4;15:96. doi: 10.1186/1471-2164-15-96.

18.

V-GAP: Viral genome assembly pipeline.

Nakamura Y, Yasuike M, Nishiki I, Iwasaki Y, Fujiwara A, Kawato Y, Nakai T, Nagai S, Kobayashi T, Gojobori T, Ototake M.

Gene. 2016 Feb 1;576(2 Pt 1):676-80. doi: 10.1016/j.gene.2015.10.029. Epub 2015 Oct 22.

19.

[Advance in Deep Sequencing of Small RNAs for Virus Identification and Discovery].

Li Y, Wang H, Zhang Chen, Ma X.

Bing Du Xue Bao. 2015 Jul;31(4):457-62. Review. Chinese.

PMID:
26524920
20.

Virus identification in unknown tropical febrile illness cases using deep sequencing.

Yozwiak NL, Skewes-Cox P, Stenglein MD, Balmaseda A, Harris E, DeRisi JL.

PLoS Negl Trop Dis. 2012;6(2):e1485. doi: 10.1371/journal.pntd.0001485. Epub 2012 Feb 7.

Supplemental Content

Support Center