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Items: 1 to 20 of 97

1.

The Strategies WDK: a graphical search interface and web development kit for functional genomics databases.

Fischer S, Aurrecoechea C, Brunk BP, Gao X, Harb OS, Kraemer ET, Pennington C, Treatman C, Kissinger JC, Roos DS, Stoeckert CJ.

Database (Oxford). 2011 Jun 23;2011:bar027. doi: 10.1093/database/bar027. Print 2011.

2.

Geneious plugins for the access of PlasmoDB and PiroplasmaDB databases.

Ma C, Gunther S, Cooke B, Coppel RL.

Parasitol Int. 2013 Apr;62(2):134-6. doi: 10.1016/j.parint.2012.11.003. Epub 2012 Nov 24.

PMID:
23183102
3.

EuPathDB: a portal to eukaryotic pathogen databases.

Aurrecoechea C, Brestelli J, Brunk BP, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer ET, Li W, Miller JA, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Srinivasamoorthy G, Stoeckert CJ Jr, Thibodeau R, Treatman C, Wang H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D415-9. doi: 10.1093/nar/gkp941. Epub 2009 Nov 13.

4.

TriTrypDB: a functional genomic resource for the Trypanosomatidae.

Aslett M, Aurrecoechea C, Berriman M, Brestelli J, Brunk BP, Carrington M, Depledge DP, Fischer S, Gajria B, Gao X, Gardner MJ, Gingle A, Grant G, Harb OS, Heiges M, Hertz-Fowler C, Houston R, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Logan FJ, Miller JA, Mitra S, Myler PJ, Nayak V, Pennington C, Phan I, Pinney DF, Ramasamy G, Rogers MB, Roos DS, Ross C, Sivam D, Smith DF, Srinivasamoorthy G, Stoeckert CJ Jr, Subramanian S, Thibodeau R, Tivey A, Treatman C, Velarde G, Wang H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D457-62. doi: 10.1093/nar/gkp851. Epub 2009 Oct 20.

5.

EuPathDB: the eukaryotic pathogen genomics database resource.

Aurrecoechea C, Barreto A, Basenko EY, Brestelli J, Brunk BP, Cade S, Crouch K, Doherty R, Falke D, Fischer S, Gajria B, Harb OS, Heiges M, Hertz-Fowler C, Hu S, Iodice J, Kissinger JC, Lawrence C, Li W, Pinney DF, Pulman JA, Roos DS, Shanmugasundram A, Silva-Franco F, Steinbiss S, Stoeckert CJ Jr, Spruill D, Wang H, Warrenfeltz S, Zheng J.

Nucleic Acids Res. 2017 Jan 4;45(D1):D581-D591. doi: 10.1093/nar/gkw1105. Epub 2016 Nov 29.

6.

AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species.

Aurrecoechea C, Barreto A, Brestelli J, Brunk BP, Caler EV, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Iodice J, Kissinger JC, Kraemer ET, Li W, Nayak V, Pennington C, Pinney DF, Pitts B, Roos DS, Srinivasamoorthy G, Stoeckert CJ Jr, Treatman C, Wang H.

Nucleic Acids Res. 2011 Jan;39(Database issue):D612-9. doi: 10.1093/nar/gkq1006. Epub 2010 Oct 24.

7.

The missing graphical user interface for genomics.

Schatz MC.

Genome Biol. 2010;11(8):128. doi: 10.1186/gb-2010-11-8-128. Epub 2010 Aug 25.

8.

The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface.

Chen J, Zhao P, Massaro D, Clerch LB, Almon RR, DuBois DC, Jusko WJ, Hoffman EP.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D578-81.

9.

FungiDB: an integrated functional genomics database for fungi.

Stajich JE, Harris T, Brunk BP, Brestelli J, Fischer S, Harb OS, Kissinger JC, Li W, Nayak V, Pinney DF, Stoeckert CJ Jr, Roos DS.

Nucleic Acids Res. 2012 Jan;40(Database issue):D675-81. doi: 10.1093/nar/gkr918. Epub 2011 Nov 7.

10.

YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit.

Balakrishnan R, Park J, Karra K, Hitz BC, Binkley G, Hong EL, Sullivan J, Micklem G, Cherry JM.

Database (Oxford). 2012 Mar 20;2012:bar062. doi: 10.1093/database/bar062. Print 2012.

11.

metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research.

Lyne M, Smith RN, Lyne R, Aleksic J, Hu F, Kalderimis A, Stepan R, Micklem G.

Database (Oxford). 2013 Aug 9;2013:bat060. doi: 10.1093/database/bat060. Print 2013.

12.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

13.

PlasmoDB: a functional genomic database for malaria parasites.

Aurrecoechea C, Brestelli J, Brunk BP, Dommer J, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Miller JA, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Stoeckert CJ Jr, Treatman C, Wang H.

Nucleic Acids Res. 2009 Jan;37(Database issue):D539-43. doi: 10.1093/nar/gkn814. Epub 2008 Oct 28.

14.

Establishment of the genetic/genomic competency center for education.

Calzone KA, Jerome-D'Emilia B, Jenkins J, Goldgar C, Rackover M, Jackson J, Chen Y, Voss J, Feero WG.

J Nurs Scholarsh. 2011 Dec;43(4):351-8. doi: 10.1111/j.1547-5069.2011.01412.x. Epub 2011 Aug 26.

PMID:
21981551
15.

Tracker: continuous HMMER and BLAST searching.

Marchin M, Kelly PT, Fang J.

Bioinformatics. 2005 Feb 1;21(3):388-9. Epub 2004 Sep 3.

PMID:
15347577
16.

BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams.

Hulsen T, de Vlieg J, Alkema W.

BMC Genomics. 2008 Oct 16;9:488. doi: 10.1186/1471-2164-9-488.

17.

ESTree db: a tool for peach functional genomics.

Lazzari B, Caprera A, Vecchietti A, Stella A, Milanesi L, Pozzi C.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S16.

18.

PEDANT genome database: 10 years online.

Riley ML, Schmidt T, Artamonova II, Wagner C, Volz A, Heumann K, Mewes HW, Frishman D.

Nucleic Acids Res. 2007 Jan;35(Database issue):D354-7. Epub 2006 Dec 5.

19.

MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.

Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, De Block P, Hamon P, Campa C, de Kochko A, Hamon S, Poncet V.

BMC Plant Biol. 2009 Sep 29;9:123. doi: 10.1186/1471-2229-9-123.

20.

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.

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