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Items: 1 to 20 of 119

1.

Binary classification of protein molecules into intrinsically disordered and ordered segments.

Fukuchi S, Hosoda K, Homma K, Gojobori T, Nishikawa K.

BMC Struct Biol. 2011 Jun 22;11:29. doi: 10.1186/1472-6807-11-29.

2.
3.

Intrinsic disorder in the Protein Data Bank.

Le Gall T, Romero PR, Cortese MS, Uversky VN, Dunker AK.

J Biomol Struct Dyn. 2007 Feb;24(4):325-42.

PMID:
17206849
4.

Intrinsically disordered regions have specific functions in mitochondrial and nuclear proteins.

Homma K, Fukuchi S, Nishikawa K, Sakamoto S, Sugawara H.

Mol Biosyst. 2012 Jan;8(1):247-55. doi: 10.1039/c1mb05208j. Epub 2011 Aug 24.

PMID:
21866296
5.

The unfoldomics decade: an update on intrinsically disordered proteins.

Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S1. doi: 10.1186/1471-2164-9-S2-S1.

6.

Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation.

Minezaki Y, Homma K, Kinjo AR, Nishikawa K.

J Mol Biol. 2006 Jun 16;359(4):1137-49. Epub 2006 Apr 25. Erratum in: J Mol Biol. 2006 Oct 13;363(1):309.

PMID:
16697407
7.

The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions.

Fukuchi S, Homma K, Sakamoto S, Sugawara H, Tateno Y, Gojobori T, Nishikawa K.

Nucleic Acids Res. 2009 Jan;37(Database issue):D333-7. doi: 10.1093/nar/gkn855. Epub 2008 Nov 4.

8.

Library of disordered patterns in 3D protein structures.

Lobanov MY, Furletova EI, Bogatyreva NS, Roytberg MA, Galzitskaya OV.

PLoS Comput Biol. 2010 Oct 14;6(10):e1000958. doi: 10.1371/journal.pcbi.1000958.

9.

Bioinformatics analysis of disordered proteins in prokaryotes.

Pavlović-Lažetić GM, Mitić NS, Kovačević JJ, Obradović Z, Malkov SN, Beljanski MV.

BMC Bioinformatics. 2011 Mar 2;12:66. doi: 10.1186/1471-2105-12-66.

10.

Intrinsically disordered proteins in human mitochondria.

Ito M, Tohsato Y, Sugisawa H, Kohara S, Fukuchi S, Nishikawa I, Nishikawa K.

Genes Cells. 2012 Oct;17(10):817-25. doi: 10.1111/gtc.12000. Epub 2012 Aug 22.

11.

Coverage of whole proteome by structural genomics observed through protein homology modeling database.

Yura K, Yamaguchi A, Go M.

J Struct Funct Genomics. 2006 Jun;7(2):65-76. Epub 2006 Dec 5.

12.

Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life.

Xue B, Dunker AK, Uversky VN.

J Biomol Struct Dyn. 2012;30(2):137-49. doi: 10.1080/07391102.2012.675145.

PMID:
22702725
13.

How Common Is Disorder? Occurrence of Disordered Residues in Four Domains of Life.

Lobanov MY, Galzitskaya OV.

Int J Mol Sci. 2015 Aug 18;16(8):19490-507. doi: 10.3390/ijms160819490.

14.

Multi-domain proteins in the three kingdoms of life: orphan domains and other unassigned regions.

Ekman D, Björklund AK, Frey-Skött J, Elofsson A.

J Mol Biol. 2005 Apr 22;348(1):231-43.

PMID:
15808866
15.

HMMerThread: detecting remote, functional conserved domains in entire genomes by combining relaxed sequence-database searches with fold recognition.

Bradshaw CR, Surendranath V, Henschel R, Mueller MS, Habermann BH.

PLoS One. 2011 Mar 10;6(3):e17568. doi: 10.1371/journal.pone.0017568.

16.

Bioinformatical approaches to characterize intrinsically disordered/unstructured proteins.

Dosztányi Z, Mészáros B, Simon I.

Brief Bioinform. 2010 Mar;11(2):225-43. doi: 10.1093/bib/bbp061. Epub 2009 Dec 10. Review.

PMID:
20007729
17.

Prediction of intrinsic disorder and its use in functional proteomics.

Uversky VN, Radivojac P, Iakoucheva LM, Obradovic Z, Dunker AK.

Methods Mol Biol. 2007;408:69-92.

PMID:
18314578
18.

PURE: a webserver for the prediction of domains in unassigned regions in proteins.

Reddy CC, Shameer K, Offmann BO, Sowdhamini R.

BMC Bioinformatics. 2008 Jun 14;9:281. doi: 10.1186/1471-2105-9-281.

19.

Structural genomics analysis of alternative splicing and application to isoform structure modeling.

Wang P, Yan B, Guo JT, Hicks C, Xu Y.

Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):18920-5. Epub 2005 Dec 14.

20.

Intrinsically disordered regions of human plasma membrane proteins preferentially occur in the cytoplasmic segment.

Minezaki Y, Homma K, Nishikawa K.

J Mol Biol. 2007 May 4;368(3):902-13. Epub 2007 Feb 22.

PMID:
17368479

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