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Analysis of protein dynamics at active, stalled, and collapsed replication forks.

Sirbu BM, Couch FB, Feigerle JT, Bhaskara S, Hiebert SW, Cortez D.

Genes Dev. 2011 Jun 15;25(12):1320-7. doi: 10.1101/gad.2053211.


Purification of proteins on newly synthesized DNA using iPOND.

Dungrawala H, Cortez D.

Methods Mol Biol. 2015;1228:123-31. doi: 10.1007/978-1-4939-1680-1_10.


Deletion of BRCA2 exon 27 causes defects in response to both stalled and collapsed replication forks.

Kim TM, Son MY, Dodds S, Hu L, Hasty P.

Mutat Res. 2014 Aug-Sep;766-767:66-72. doi: 10.1016/j.mrfmmm.2014.06.003.


Deletion of BRCA2 exon 27 causes defects in response to both stalled and collapsed replication forks.

Kim TM, Son MY, Dodds S, Hu L, Hasty P.

Mutat Res. 2014 Aug-Sep;766-767:66-72. doi: 10.1016/j.mrfmmm.2014.06.003.


Chromatin assembly controls replication fork stability.

Clemente-Ruiz M, Prado F.

EMBO Rep. 2009 Jul;10(7):790-6. doi: 10.1038/embor.2009.67.


The Replication Checkpoint Prevents Two Types of Fork Collapse without Regulating Replisome Stability.

Dungrawala H, Rose KL, Bhat KP, Mohni KN, Glick GG, Couch FB, Cortez D.

Mol Cell. 2015 Sep 17;59(6):998-1010. doi: 10.1016/j.molcel.2015.07.030.


Isolation of Proteins on Nascent DNA in Hypoxia and Reoxygenation Conditions.

Olcina MM, Giaccia AJ, Hammond EM.

Adv Exp Med Biol. 2016;899:27-40. doi: 10.1007/978-3-319-26666-4_3.


Identification of proteins at active, stalled, and collapsed replication forks using isolation of proteins on nascent DNA (iPOND) coupled with mass spectrometry.

Sirbu BM, McDonald WH, Dungrawala H, Badu-Nkansah A, Kavanaugh GM, Chen Y, Tabb DL, Cortez D.

J Biol Chem. 2013 Nov 1;288(44):31458-67. doi: 10.1074/jbc.M113.511337.


Mammalian RAD51 paralogs protect nascent DNA at stalled forks and mediate replication restart.

Somyajit K, Saxena S, Babu S, Mishra A, Nagaraju G.

Nucleic Acids Res. 2015 Nov 16;43(20):9835-55. doi: 10.1093/nar/gkv880.


Preventing replication fork collapse to maintain genome integrity.

Cortez D.

DNA Repair (Amst). 2015 Aug;32:149-57. doi: 10.1016/j.dnarep.2015.04.026. Review.


FANCD2-controlled chromatin access of the Fanconi-associated nuclease FAN1 is crucial for the recovery of stalled replication forks.

Chaudhury I, Stroik DR, Sobeck A.

Mol Cell Biol. 2014 Nov;34(21):3939-54. doi: 10.1128/MCB.00457-14.


CtIP mediates replication fork recovery in a FANCD2-regulated manner.

Yeo JE, Lee EH, Hendrickson EA, Sobeck A.

Hum Mol Genet. 2014 Jul 15;23(14):3695-705. doi: 10.1093/hmg/ddu078.


The fork and the kinase: a DNA replication tale from a CHK1 perspective.

González Besteiro MA, Gottifredi V.

Mutat Res Rev Mutat Res. 2015 Jan-Mar;763:168-80. doi: 10.1016/j.mrrev.2014.10.003. Review.


Phosphorylated RPA recruits PALB2 to stalled DNA replication forks to facilitate fork recovery.

Murphy AK, Fitzgerald M, Ro T, Kim JH, Rabinowitsch AI, Chowdhury D, Schildkraut CL, Borowiec JA.

J Cell Biol. 2014 Aug 18;206(4):493-507. doi: 10.1083/jcb.201404111.


Metnase promotes restart and repair of stalled and collapsed replication forks.

De Haro LP, Wray J, Williamson EA, Durant ST, Corwin L, Gentry AC, Osheroff N, Lee SH, Hromas R, Nickoloff JA.

Nucleic Acids Res. 2010 Sep;38(17):5681-91. doi: 10.1093/nar/gkq339.


New histone supply regulates replication fork speed and PCNA unloading.

Mejlvang J, Feng Y, Alabert C, Neelsen KJ, Jasencakova Z, Zhao X, Lees M, Sandelin A, Pasero P, Lopes M, Groth A.

J Cell Biol. 2014 Jan 6;204(1):29-43. doi: 10.1083/jcb.201305017.


Human single-stranded DNA binding protein 1 (hSSB1/NABP2) is required for the stability and repair of stalled replication forks.

Bolderson E, Petermann E, Croft L, Suraweera A, Pandita RK, Pandita TK, Helleday T, Khanna KK, Richard DJ.

Nucleic Acids Res. 2014 Jun;42(10):6326-36. doi: 10.1093/nar/gku276.


RFWD3-Dependent Ubiquitination of RPA Regulates Repair at Stalled Replication Forks.

Elia AE, Wang DC, Willis NA, Boardman AP, Hajdu I, Adeyemi RO, Lowry E, Gygi SP, Scully R, Elledge SJ.

Mol Cell. 2015 Oct 15;60(2):280-93. doi: 10.1016/j.molcel.2015.09.011.


Chk1 phosphorylation of Metnase enhances DNA repair but inhibits replication fork restart.

Hromas R, Williamson EA, Fnu S, Lee YJ, Park SJ, Beck BD, You JS, Leitao A, Nickoloff JA, Lee SH.

Oncogene. 2012 Sep 20;31(38):4245-54. doi: 10.1038/onc.2011.586. Erratum in: Oncogene. 2014 Jan 23;33(4):536. Laitao, A [corrected to Leitao, A].

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