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Items: 1 to 20 of 189

1.

Genome-wide genetic marker discovery and genotyping using next-generation sequencing.

Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, Blaxter ML.

Nat Rev Genet. 2011 Jun 17;12(7):499-510. doi: 10.1038/nrg3012. Review.

PMID:
21681211
2.

Next generation breeding.

Barabaschi D, Tondelli A, Desiderio F, Volante A, Vaccino P, Valè G, Cattivelli L.

Plant Sci. 2016 Jan;242:3-13. doi: 10.1016/j.plantsci.2015.07.010. Epub 2015 Jul 19. Review.

PMID:
26566820
3.

Population genomic analyses from low-coverage RAD-Seq data: a case study on the non-model cucurbit bottle gourd.

Xu P, Xu S, Wu X, Tao Y, Wang B, Wang S, Qin D, Lu Z, Li G.

Plant J. 2014 Feb;77(3):430-42. doi: 10.1111/tpj.12370. Epub 2013 Dec 10.

4.

Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms.

Greminger MP, Stölting KN, Nater A, Goossens B, Arora N, Bruggmann R, Patrignani A, Nussberger B, Sharma R, Kraus RH, Ambu LN, Singleton I, Chikhi L, van Schaik CP, Krützen M.

BMC Genomics. 2014 Jan 10;15:16. doi: 10.1186/1471-2164-15-16.

5.

Two different high throughput sequencing approaches identify thousands of de novo genomic markers for the genetically depleted Bornean elephant.

Sharma R, Goossens B, Kun-Rodrigues C, Teixeira T, Othman N, Boone JQ, Jue NK, Obergfell C, O'Neill RJ, Chikhi L.

PLoS One. 2012;7(11):e49533. doi: 10.1371/journal.pone.0049533. Epub 2012 Nov 21. Erratum in: PLoS One. 2013;8(7). doi: 10.1371/annotation/8aaa2a9c-9c15-4214-808d-db8b0bd8ab88.

6.

Next generation sequencing and omics in cucumber (Cucumis sativus L.) breeding directed research.

Pawełkowicz M, Zieliński K, Zielińska D, Pląder W, Yagi K, Wojcieszek M, Siedlecka E, Bartoszewski G, Skarzyńska A, Przybecki Z.

Plant Sci. 2016 Jan;242:77-88. doi: 10.1016/j.plantsci.2015.07.025. Epub 2015 Jul 31. Review.

PMID:
26566826
7.

Genotyping-by-Sequencing and Its Application to Oat Genomic Research.

Fu YB, Yang MH.

Methods Mol Biol. 2017;1536:169-187. doi: 10.1007/978-1-4939-6682-0_13. Review.

PMID:
28132151
8.

Population genomic analysis of model and nonmodel organisms using sequenced RAD tags.

Hohenlohe PA, Catchen J, Cresko WA.

Methods Mol Biol. 2012;888:235-60. doi: 10.1007/978-1-61779-870-2_14.

PMID:
22665285
9.

mInDel: a high-throughput and efficient pipeline for genome-wide InDel marker development.

Lv Y, Liu Y, Zhao H.

BMC Genomics. 2016 Apr 14;17:290. doi: 10.1186/s12864-016-2614-5.

10.

One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies.

Yuan S, Johnston HR, Zhang G, Li Y, Hu YJ, Qin ZS.

PLoS Comput Biol. 2015 Aug 12;11(8):e1004448. doi: 10.1371/journal.pcbi.1004448. eCollection 2015 Aug.

11.

Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing.

Gonen S, Lowe NR, Cezard T, Gharbi K, Bishop SC, Houston RD.

BMC Genomics. 2014 Feb 27;15:166. doi: 10.1186/1471-2164-15-166.

12.

Special features of RAD Sequencing data: implications for genotyping.

Davey JW, Cezard T, Fuentes-Utrilla P, Eland C, Gharbi K, Blaxter ML.

Mol Ecol. 2013 Jun;22(11):3151-64. doi: 10.1111/mec.12084. Epub 2012 Oct 30.

13.

Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism.

Baxter SW, Davey JW, Johnston JS, Shelton AM, Heckel DG, Jiggins CD, Blaxter ML.

PLoS One. 2011 Apr 26;6(4):e19315. doi: 10.1371/journal.pone.0019315.

15.

High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.).

Trebbi D, Maccaferri M, de Heer P, Sørensen A, Giuliani S, Salvi S, Sanguineti MC, Massi A, van der Vossen EA, Tuberosa R.

Theor Appl Genet. 2011 Aug;123(4):555-69. doi: 10.1007/s00122-011-1607-7. Epub 2011 May 25.

PMID:
21611761
16.

Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome.

Faino L, Seidl MF, Datema E, van den Berg GC, Janssen A, Wittenberg AH, Thomma BP.

MBio. 2015 Aug 18;6(4). pii: e00936-15. doi: 10.1128/mBio.00936-15.

17.

Construction of a high-density genetic map for grape using next generation restriction-site associated DNA sequencing.

Wang N, Fang L, Xin H, Wang L, Li S.

BMC Plant Biol. 2012 Aug 21;12:148. doi: 10.1186/1471-2229-12-148.

18.

Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries.

Kumar S, You FM, Cloutier S.

BMC Genomics. 2012 Dec 6;13:684. doi: 10.1186/1471-2164-13-684.

19.

Genotyping by genome reducing and sequencing for outbred animals.

Chen Q, Ma Y, Yang Y, Chen Z, Liao R, Xie X, Wang Z, He P, Tu Y, Zhang X, Yang C, Yang H, Yu F, Zheng Y, Zhang Z, Wang Q, Pan Y.

PLoS One. 2013 Jul 18;8(7):e67500. doi: 10.1371/journal.pone.0067500. Print 2013.

20.

Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon.

Houston RD, Davey JW, Bishop SC, Lowe NR, Mota-Velasco JC, Hamilton A, Guy DR, Tinch AE, Thomson ML, Blaxter ML, Gharbi K, Bron JE, Taggart JB.

BMC Genomics. 2012 Jun 15;13:244. doi: 10.1186/1471-2164-13-244.

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