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Lack of compartmentalization of HIV-1 quasispecies between the gut and peripheral blood compartments.

Imamichi H, Degray G, Dewar RL, Mannon P, Yao M, Chairez C, Sereti I, Kovacs JA.

J Infect Dis. 2011 Jul 15;204(2):309-14. doi: 10.1093/infdis/jir259.


Greater diversity of HIV DNA variants in the rectum compared to variants in the blood in patients without HAART.

Avettand-Fenoel V, Hocqueloux L, Müller-Trutwin M, Prazuck T, Melard A, Chaix ML, Agoute E, Michau C, Rouzioux C.

J Med Virol. 2011 Sep;83(9):1499-507. doi: 10.1002/jmv.22132.


Compartmentalization of the gut viral reservoir in HIV-1 infected patients.

van Marle G, Gill MJ, Kolodka D, McManus L, Grant T, Church DL.

Retrovirology. 2007 Dec 4;4:87.


Human immunodeficiency virus type-1 group M quasispecies evolution: diversity and divergence in patients co-infected with active tuberculosis.

Biru T, Lennemann T, Stürmer M, Stephan C, Nisius G, Cinatl J, Staszewski S, Gürtler LG.

Med Microbiol Immunol. 2010 Nov;199(4):323-32. doi: 10.1007/s00430-010-0167-9. Epub 2010 Aug 10.


Identification of human immunodeficiency virus type 1 subtypes B and F B/F recombinant and dual infection with these subtypes in Argentina.

Fernández-Medina D, Jansson M, Rabinovich RD, Libonatti O, Wigzell H.

Scand J Infect Dis. 1999;31(3):235-42.


Higher levels of Zidovudine resistant HIV in the colon compared to blood and other gastrointestinal compartments in HIV infection.

van Marle G, Church DL, Nunweiler KD, Cannon K, Wainberg MA, Gill MJ.

Retrovirology. 2010 Sep 13;7:74. doi: 10.1186/1742-4690-7-74.


Compartmentalization of HIV-1 between breast milk and blood of HIV-infected mothers.

Becquart P, Chomont N, Roques P, Ayouba A, Kazatchkine MD, Bélec L, Hocini H.

Virology. 2002 Aug 15;300(1):109-17.


Limited evolution of human immunodeficiency virus type 1 in the thymus of a perinatally infected child.

Scinicariello F, Kourtis AP, Nesheim S, Abramowsky C, Lee FK.

Clin Infect Dis. 2010 Mar 1;50(5):726-32. doi: 10.1086/650453.


Genetic analyses of HIV-1 env sequences demonstrate limited compartmentalization in breast milk and suggest viral replication within the breast that increases with mastitis.

Gantt S, Carlsson J, Heath L, Bull ME, Shetty AK, Mutsvangwa J, Musingwini G, Woelk G, Zijenah LS, Katzenstein DA, Mullins JI, Frenkel LM.

J Virol. 2010 Oct;84(20):10812-9. doi: 10.1128/JVI.00543-10. Epub 2010 Jul 21.


Quasispecies tropism and compartmentalization in gut and peripheral blood during early and chronic phases of HIV-1 infection: possible correlation with immune activation markers.

Rozera G, Abbate I, Vlassi C, Giombini E, Lionetti R, Selleri M, Zaccaro P, Bartolini B, Corpolongo A, D'Offizi G, Baiocchini A, Del Nonno F, Ippolito G, Capobianchi MR.

Clin Microbiol Infect. 2014 Mar;20(3):O157-66. doi: 10.1111/1469-0691.12367. Epub 2013 Oct 18.


Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations.

Rozera G, Abbate I, Bruselles A, Vlassi C, D'Offizi G, Narciso P, Chillemi G, Prosperi M, Ippolito G, Capobianchi MR.

Retrovirology. 2009 Feb 12;6:15. doi: 10.1186/1742-4690-6-15.


Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1.

Poss M, Rodrigo AG, Gosink JJ, Learn GH, de Vange Panteleeff D, Martin HL Jr, Bwayo J, Kreiss JK, Overbaugh J.

J Virol. 1998 Oct;72(10):8240-51.


Characterization of HIV type 1 env gene in cerebrospinal fluid and blood of infected Chinese patients.

Wei F, Wang X, Liu L, Gao R, Shi Y, Zhang Y, Qiao L, Chen D.

AIDS Res Hum Retroviruses. 2011 Jul;27(7):793-6. doi: 10.1089/AID.2010.0369. Epub 2011 Mar 27.


Divergence of HIV-1 quasispecies in an epidemiologic cluster.

Diaz RS, Zhang L, Busch MP, Mosley JW, Mayer A.

AIDS. 1997 Mar 15;11(4):415-22.


Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing.

Salazar-Gonzalez JF, Bailes E, Pham KT, Salazar MG, Guffey MB, Keele BF, Derdeyn CA, Farmer P, Hunter E, Allen S, Manigart O, Mulenga J, Anderson JA, Swanstrom R, Haynes BF, Athreya GS, Korber BT, Sharp PM, Shaw GM, Hahn BH.

J Virol. 2008 Apr;82(8):3952-70. doi: 10.1128/JVI.02660-07. Epub 2008 Feb 6.


Characterization of human immunodeficiency virus (HIV1C) variants in peripheral blood mononuclear cells and spermatozoa.

Jadhav SK, Velhal SM, Deshpande A, Maitra A, Chinnaraj S, Bandivdekar AH.

J Med Virol. 2011 May;83(5):760-7. doi: 10.1002/jmv.22041.


Genetic variability of human immunodeficiency virus-1 in Bahia state, Northeast, Brazil: high diversity of HIV genotypes.

Monteiro JP, Alcantara LC, de Oliveira T, Oliveira AM, Melo MA, Brites C, Galvão-Castro B.

J Med Virol. 2009 Mar;81(3):391-9. doi: 10.1002/jmv.21414.


Origin and evolution of HIV-1 in breast milk determined by single-genome amplification and sequencing.

Salazar-Gonzalez JF, Salazar MG, Learn GH, Fouda GG, Kang HH, Mahlokozera T, Wilks AB, Lovingood RV, Stacey A, Kalilani L, Meshnick SR, Borrow P, Montefiori DC, Denny TN, Letvin NL, Shaw GM, Hahn BH, Permar SR; Center for HIV/AIDS Vaccine Immunology A0167854.

J Virol. 2011 Mar;85(6):2751-63. doi: 10.1128/JVI.02316-10. Epub 2010 Dec 29.


Molecular cloning and analysis of functional envelope genes from human immunodeficiency virus type 1 sequence subtypes A through G. The WHO and NIAID Networks for HIV Isolation and Characterization.

Gao F, Morrison SG, Robertson DL, Thornton CL, Craig S, Karlsson G, Sodroski J, Morgado M, Galvao-Castro B, von Briesen H, Beddows S, Weber J, Sharp PM, Shaw GM, Hahn BH.

J Virol. 1996 Mar;70(3):1651-67.


Genetic characterization of HIV type 1 and type 2 from Bissau, Guinea-Bissau (West Africa).

Esteves A, Parreira R, Piedade J, Venenno T, Canas-Ferreira WF.

Virus Res. 2000 Jun;68(1):51-61.


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