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Items: 1 to 20 of 51

1.

A tissue-specific landscape of sense/antisense transcription in the mouse intestine.

Klostermeier UC, Barann M, Wittig M, Häsler R, Franke A, Gavrilova O, Kreck B, Sina C, Schilhabel MB, Schreiber S, Rosenstiel P.

BMC Genomics. 2011 Jun 10;12:305. doi: 10.1186/1471-2164-12-305.

2.

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq.

Lu T, Lu G, Fan D, Zhu C, Li W, Zhao Q, Feng Q, Zhao Y, Guo Y, Li W, Huang X, Han B.

Genome Res. 2010 Sep;20(9):1238-49. doi: 10.1101/gr.106120.110. Epub 2010 Jul 13.

3.

Expression profiling of antisense transcripts on DNA arrays.

Werner A, Schmutzler G, Carlile M, Miles CG, Peters H.

Physiol Genomics. 2007 Feb 12;28(3):294-300. Epub 2006 Nov 14.

PMID:
17105753
4.

Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling.

Thiagarajan RD, Cloonan N, Gardiner BB, Mercer TR, Kolle G, Nourbakhsh E, Wani S, Tang D, Krishnan K, Georgas KM, Rumballe BA, Chiu HS, Steen JA, Mattick JS, Little MH, Grimmond SM.

BMC Genomics. 2011 Sep 5;12:441. doi: 10.1186/1471-2164-12-441.

5.

Changes in the transcriptional profile of transporters in the intestine along the anterior-posterior and crypt-villus axes.

Anderle P, Sengstag T, Mutch DM, Rumbo M, Praz V, Mansourian R, Delorenzi M, Williamson G, Roberts MA.

BMC Genomics. 2005 May 10;6:69.

6.

Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes.

Numata K, Osada Y, Okada Y, Saito R, Hiraiwa N, Nakaoka H, Yamamoto N, Watanabe K, Okubo K, Kohama C, Kanai A, Abe K, Kiyosawa H.

BMC Genomics. 2009 Aug 22;10:392. doi: 10.1186/1471-2164-10-392.

7.

Genome-wide analysis of expression modes and DNA methylation status at sense-antisense transcript loci in mouse.

Watanabe Y, Numata K, Murata S, Osada Y, Saito R, Nakaoka H, Yamamoto N, Watanabe K, Kato H, Abe K, Kiyosawa H.

Genomics. 2010 Dec;96(6):333-41. doi: 10.1016/j.ygeno.2010.08.007. Epub 2010 Aug 22.

8.

Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing.

Mane SP, Evans C, Cooper KL, Crasta OR, Folkerts O, Hutchison SK, Harkins TT, Thierry-Mieg D, Thierry-Mieg J, Jensen RV.

BMC Genomics. 2009 Jun 12;10:264. doi: 10.1186/1471-2164-10-264.

9.

Disclosing hidden transcripts: mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized.

Kiyosawa H, Mise N, Iwase S, Hayashizaki Y, Abe K.

Genome Res. 2005 Apr;15(4):463-74. Epub 2005 Mar 21.

10.

Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles.

Blazie SM, Babb C, Wilky H, Rawls A, Park JG, Mangone M.

BMC Biol. 2015 Jan 20;13:4. doi: 10.1186/s12915-015-0116-6.

11.

Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation.

Flaherty BL, Van Nieuwerburgh F, Head SR, Golden JW.

BMC Genomics. 2011 Jun 28;12:332. doi: 10.1186/1471-2164-12-332.

12.

A global view of porcine transcriptome in three tissues from a full-sib pair with extreme phenotypes in growth and fat deposition by paired-end RNA sequencing.

Chen C, Ai H, Ren J, Li W, Li P, Qiao R, Ouyang J, Yang M, Ma J, Huang L.

BMC Genomics. 2011 Sep 10;12:448. doi: 10.1186/1471-2164-12-448.

13.

Comprehensive expressional analyses of antisense transcripts in colon cancer tissues using artificial antisense probes.

Saito R, Kohno K, Okada Y, Osada Y, Numata K, Kohama C, Watanabe K, Nakaoka H, Yamamoto N, Kanai A, Yasue H, Murata S, Abe K, Tomita M, Ohkohchi N, Kiyosawa H.

BMC Med Genomics. 2011 May 16;4:42. doi: 10.1186/1755-8794-4-42.

14.

Transcriptional profiling of endocrine cerebro-osteodysplasia using microarray and next-generation sequencing.

Lahiry P, Lee LJ, Frey BJ, Rupar CA, Siu VM, Blencowe BJ, Hegele RA.

PLoS One. 2011;6(9):e25400. doi: 10.1371/journal.pone.0025400. Epub 2011 Sep 27.

15.

Comparative expression analysis uncovers novel features of endogenous antisense transcription.

Okada Y, Tashiro C, Numata K, Watanabe K, Nakaoka H, Yamamoto N, Okubo K, Ikeda R, Saito R, Kanai A, Abe K, Tomita M, Kiyosawa H.

Hum Mol Genet. 2008 Jun 1;17(11):1631-40. doi: 10.1093/hmg/ddn051. Epub 2008 Feb 18.

PMID:
18283053
16.

Transcriptome complexity in a genome-reduced bacterium.

Güell M, van Noort V, Yus E, Chen WH, Leigh-Bell J, Michalodimitrakis K, Yamada T, Arumugam M, Doerks T, Kühner S, Rode M, Suyama M, Schmidt S, Gavin AC, Bork P, Serrano L.

Science. 2009 Nov 27;326(5957):1268-71. doi: 10.1126/science.1176951.

17.

Genome-wide analysis of antisense transcription with Affymetrix exon array.

Ge X, Rubinstein WS, Jung YC, Wu Q.

BMC Genomics. 2008 Jan 22;9:27. doi: 10.1186/1471-2164-9-27.

18.

Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing.

Meyers BC, Vu TH, Tej SS, Ghazal H, Matvienko M, Agrawal V, Ning J, Haudenschild CD.

Nat Biotechnol. 2004 Aug;22(8):1006-11. Epub 2004 Jul 11.

PMID:
15247925
19.

De novo intestine-specific transcriptome of the brown planthopper Nilaparvata lugens revealed potential functions in digestion, detoxification and immune response.

Bao YY, Wang Y, Wu WJ, Zhao D, Xue J, Zhang BQ, Shen ZC, Zhang CX.

Genomics. 2012 Apr;99(4):256-64. doi: 10.1016/j.ygeno.2012.02.002. Epub 2012 Feb 15.

20.

Transcriptome analysis of the model protozoan, Tetrahymena thermophila, using Deep RNA sequencing.

Xiong J, Lu X, Zhou Z, Chang Y, Yuan D, Tian M, Zhou Z, Wang L, Fu C, Orias E, Miao W.

PLoS One. 2012;7(2):e30630. doi: 10.1371/journal.pone.0030630. Epub 2012 Feb 7.

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