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Items: 1 to 20 of 85

1.

PILGRM: an interactive data-driven discovery platform for expert biologists.

Greene CS, Troyanskaya OG.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W368-74. doi: 10.1093/nar/gkr440. Epub 2011 Jun 7.

2.

IMP 2.0: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.

Wong AK, Krishnan A, Yao V, Tadych A, Troyanskaya OG.

Nucleic Acids Res. 2015 Jul 1;43(W1):W128-33. doi: 10.1093/nar/gkv486. Epub 2015 May 12.

3.

IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.

Wong AK, Park CY, Greene CS, Bongo LA, Guan Y, Troyanskaya OG.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W484-90. doi: 10.1093/nar/gks458. Epub 2012 Jun 7.

4.
5.

Gene Aging Nexus: a web database and data mining platform for microarray data on aging.

Pan F, Chiu CH, Pulapura S, Mehan MR, Nunez-Iglesias J, Zhang K, Kamath K, Waterman MS, Finch CE, Zhou XJ.

Nucleic Acids Res. 2007 Jan;35(Database issue):D756-9. Epub 2006 Nov 7.

6.

GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions.

Gundersen GW, Jones MR, Rouillard AD, Kou Y, Monteiro CD, Feldmann AS, Hu KS, Ma'ayan A.

Bioinformatics. 2015 Sep 15;31(18):3060-2. doi: 10.1093/bioinformatics/btv297. Epub 2015 May 13.

7.

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.

8.

THEME: a web tool for loop-design microarray data analysis.

Chen CR, Shu WY, Tsai ML, Cheng WC, Hsu IC.

Comput Biol Med. 2012 Feb;42(2):228-34. doi: 10.1016/j.compbiomed.2011.11.012. Epub 2011 Dec 20.

PMID:
22188791
9.

Goober: a fully integrated and user-friendly microarray data management and analysis solution for core labs and bench biologists.

Luo W, Gudipati M, Jung K, Chen M, Marschke KB.

J Integr Bioinform. 2009 Aug 23;6(1):108. doi: 10.2390/biecoll-jib-2009-108.

PMID:
20134074
10.

Recent additions and improvements to the Onto-Tools.

Khatri P, Sellamuthu S, Malhotra P, Amin K, Done A, Draghici S.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W762-5.

11.

PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments.

Usadel B, Nagel A, Steinhauser D, Gibon Y, Bläsing OE, Redestig H, Sreenivasulu N, Krall L, Hannah MA, Poree F, Fernie AR, Stitt M.

BMC Bioinformatics. 2006 Dec 18;7:535.

12.

The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface.

Chen J, Zhao P, Massaro D, Clerch LB, Almon RR, DuBois DC, Jusko WJ, Hoffman EP.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D578-81.

13.

GEM-TREND: a web tool for gene expression data mining toward relevant network discovery.

Feng C, Araki M, Kunimoto R, Tamon A, Makiguchi H, Niijima S, Tsujimoto G, Okuno Y.

BMC Genomics. 2009 Sep 3;10:411. doi: 10.1186/1471-2164-10-411.

14.

Genomics Portals: integrative web-platform for mining genomics data.

Shinde K, Phatak M, Johannes FM, Chen J, Li Q, Vineet JK, Hu Z, Ghosh K, Meller J, Medvedovic M.

BMC Genomics. 2010 Jan 13;11:27. doi: 10.1186/1471-2164-11-27.

15.

Alkahest NuclearBLAST : a user-friendly BLAST management and analysis system.

Diener SE, Houfek TD, Kalat SE, Windham DE, Burke M, Opperman C, Dean RA.

BMC Bioinformatics. 2005 Jun 15;6:147.

16.

CGAS: comparative genomic analysis server.

Itoh M, Watanabe H.

Bioinformatics. 2009 Apr 1;25(7):958-9. doi: 10.1093/bioinformatics/btp086. Epub 2009 Feb 13.

17.

GBA server: EST-based digital gene expression profiling.

Wu X, Walker MG, Luo J, Wei L.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W673-6.

18.

arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays.

Menten B, Pattyn F, De Preter K, Robbrecht P, Michels E, Buysse K, Mortier G, De Paepe A, van Vooren S, Vermeesch J, Moreau Y, De Moor B, Vermeulen S, Speleman F, Vandesompele J.

BMC Bioinformatics. 2005 May 23;6:124.

19.

BiologicalNetworks: visualization and analysis tool for systems biology.

Baitaluk M, Sedova M, Ray A, Gupta A.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W466-71.

20.

MADIBA: a web server toolkit for biological interpretation of Plasmodium and plant gene clusters.

Law PJ, Claudel-Renard C, Joubert F, Louw AI, Berger DK.

BMC Genomics. 2008 Feb 28;9:105. doi: 10.1186/1471-2164-9-105.

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