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Items: 1 to 20 of 74

1.

Two-intermediate model to characterize the structure of fast-folding proteins.

Roterman I, Konieczny L, Jurkowski W, Prymula K, Banach M.

J Theor Biol. 2011 Aug 21;283(1):60-70. doi: 10.1016/j.jtbi.2011.05.027. Epub 2011 May 27.

PMID:
21635900
2.

Fuzzy-oil-drop hydrophobic force field--a model to represent late-stage folding (in silico) of lysozyme.

Brylinski M, Konieczny L, Roterman I.

J Biomol Struct Dyn. 2006 Apr;23(5):519-28.

PMID:
16494501
3.

Fuzzy oil drop model to interpret the structure of antifreeze proteins and their mutants.

Banach M, Prymula K, Jurkowski W, Konieczny L, Roterman I.

J Mol Model. 2012 Jan;18(1):229-37. doi: 10.1007/s00894-011-1033-4. Epub 2011 Apr 27.

4.

Intermediates in the protein folding process: a computational model.

Roterman I, Konieczny L, Banach M, Jurkowski W.

Int J Mol Sci. 2011;12(8):4850-60. doi: 10.3390/ijms11084850. Epub 2011 Jul 29.

5.

Hydrophobic collapse in (in silico) protein folding.

Brylinski M, Konieczny L, Roterman I.

Comput Biol Chem. 2006 Aug;30(4):255-67. Epub 2006 Jun 22.

PMID:
16798094
6.

Gauss-function-Based model of hydrophobicity density in proteins.

Konieczny L, Brylinski M, Roterman I.

In Silico Biol. 2006;6(1-2):15-22.

PMID:
16789910
7.

Geometric parameters defining the structure of proteins--relation to early-stage folding step.

Jurkowski W, Kułaga T, Roterman I.

J Biomol Struct Dyn. 2011 Aug;29(1):79-104.

PMID:
21696227
8.

Hydrophobic collapse in late-stage folding (in silico) of bovine pancreatic trypsin inhibitor.

Brylinski M, Konieczny L, Roterman I.

Biochimie. 2006 Sep;88(9):1229-39. Epub 2006 Apr 7.

PMID:
16647798
9.

Kinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water.

Mohanty D, Elber R, Thirumalai D, Beglov D, Roux B.

J Mol Biol. 1997 Sep 26;272(3):423-42.

PMID:
9325101
10.
11.

Factors governing the foldability of proteins.

Klimov DK, Thirumalai D.

Proteins. 1996 Dec;26(4):411-41.

PMID:
8990496
12.

Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.

Kolinski A, Skolnick J.

Proteins. 1994 Apr;18(4):338-52.

PMID:
8208726
13.

Breaking non-native hydrophobic clusters is the rate-limiting step in the folding of an alanine-based peptide.

Chowdhury S, Zhang W, Wu C, Xiong G, Duan Y.

Biopolymers. 2003 Jan;68(1):63-75.

PMID:
12579580
15.

The nature of the free energy barriers to two-state folding.

Akmal A, Muñoz V.

Proteins. 2004 Oct 1;57(1):142-52.

PMID:
15326600
16.
17.

Entropy capacity determines protein folding.

Galzitskaya OV, Garbuzynskiy SO.

Proteins. 2006 Apr 1;63(1):144-54.

PMID:
16400647
18.

Localization of ligand binding site in proteins identified in silico.

Brylinski M, Kochanczyk M, Broniatowska E, Roterman I.

J Mol Model. 2007 Jul;13(6-7):665-75. Epub 2007 Mar 30.

PMID:
17394030
19.
20.

Structural, thermodynamic, and kinetic properties of Gramicidin analogue GS6 studied by molecular dynamics simulations and statistical mechanics.

Zanetti-Polzi L, Anselmi M, D'Alessandro M, Amadei A, Di Nola A.

Biopolymers. 2009 Dec;91(12):1154-60. doi: 10.1002/bip.21215.

PMID:
19396809

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