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Items: 1 to 20 of 74

1.

An expanded protein-protein interaction network in Bacillus subtilis reveals a group of hubs: Exploration by an integrative approach.

Marchadier E, Carballido-López R, Brinster S, Fabret C, Mervelet P, Bessières P, Noirot-Gros MF, Fromion V, Noirot P.

Proteomics. 2011 Aug;11(15):2981-91. doi: 10.1002/pmic.201000791. Epub 2011 May 31.

PMID:
21630458
2.

Identification of network topological units coordinating the global expression response to glucose in Bacillus subtilis and its comparison to Escherichia coli.

Vázquez CD, Freyre-González JA, Gosset G, Loza JA, Gutiérrez-Ríos RM.

BMC Microbiol. 2009 Aug 24;9:176. doi: 10.1186/1471-2180-9-176.

3.
4.

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins.

Cho YR, Zhang A.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S3. doi: 10.1186/1471-2105-11-S3-S3.

5.

An expanded view of bacterial DNA replication.

Noirot-Gros MF, Dervyn E, Wu LJ, Mervelet P, Errington J, Ehrlich SD, Noirot P.

Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):8342-7.

6.

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225. doi: 10.1186/1471-2105-9-225.

7.

DnaD protein of Bacillus subtilis interacts with DnaA, the initiator protein of replication.

Ishigo-Oka D, Ogasawara N, Moriya S.

J Bacteriol. 2001 Mar;183(6):2148-50.

8.

The Bacillus subtilis spore coat protein interaction network.

Kim H, Hahn M, Grabowski P, McPherson DC, Otte MM, Wang R, Ferguson CC, Eichenberger P, Driks A.

Mol Microbiol. 2006 Jan;59(2):487-502.

9.
10.

SPiD: a subtilis protein interaction database.

Hoebeke M, Chiapello H, Noirot P, Bessières P.

Bioinformatics. 2001 Dec;17(12):1209-12.

PMID:
11751229
11.

Genes controlled by the essential YycG/YycF two-component system of Bacillus subtilis revealed through a novel hybrid regulator approach.

Howell A, Dubrac S, Andersen KK, Noone D, Fert J, Msadek T, Devine K.

Mol Microbiol. 2003 Sep;49(6):1639-55.

12.

Global protein-protein interaction network in the human pathogen Mycobacterium tuberculosis H37Rv.

Wang Y, Cui T, Zhang C, Yang M, Huang Y, Li W, Zhang L, Gao C, He Y, Li Y, Huang F, Zeng J, Huang C, Yang Q, Tian Y, Zhao C, Chen H, Zhang H, He ZG.

J Proteome Res. 2010 Dec 3;9(12):6665-77. doi: 10.1021/pr100808n. Epub 2010 Nov 10.

PMID:
20973567
13.

Interaction networks: from protein functions to drug discovery. A review.

Chautard E, Thierry-Mieg N, Ricard-Blum S.

Pathol Biol (Paris). 2009 Jun;57(4):324-33. doi: 10.1016/j.patbio.2008.10.004. Epub 2008 Dec 13. Review.

PMID:
19070972
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16.

The Cartographers toolbox: building bigger and better human protein interaction networks.

Sanderson CM.

Brief Funct Genomic Proteomic. 2009 Jan;8(1):1-11. doi: 10.1093/bfgp/elp003. Epub 2009 Mar 12. Review.

PMID:
19282470
17.

Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression.

De Bodt S, Proost S, Vandepoele K, Rouzé P, Van de Peer Y.

BMC Genomics. 2009 Jun 29;10:288. doi: 10.1186/1471-2164-10-288.

18.

Accounting for redundancy when integrating gene interaction databases.

Elefsinioti A, Ackermann M, Beyer A.

PLoS One. 2009 Oct 22;4(10):e7492. doi: 10.1371/journal.pone.0007492.

19.

A proteomic view of cell physiology of Bacillus subtilis--bringing the genome sequence to life.

Hecker M.

Adv Biochem Eng Biotechnol. 2003;83:57-92. Review.

PMID:
12934926
20.

Understanding gene essentiality by finely characterizing hubs in the yeast protein interaction network.

Pang K, Sheng H, Ma X.

Biochem Biophys Res Commun. 2010 Oct 8;401(1):112-6. doi: 10.1016/j.bbrc.2010.09.021. Epub 2010 Sep 15.

PMID:
20833129

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